Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P06710_001 | Banana | cytosol | 83.3 | 85.34 |
| GSMUA_Achr7P11780_001 | Banana | cytosol | 70.53 | 70.17 |
| HORVU4Hr1G080360.1 | Barley | cytosol, peroxisome, plastid | 39.52 | 67.64 |
| HORVU4Hr1G015730.1 | Barley | cytosol, peroxisome, plastid | 37.82 | 66.47 |
| VIT_18s0001g07120.t01 | Wine grape | cytosol | 65.25 | 64.48 |
| Os02t0759700-01 | Rice | cytosol | 68.65 | 63.27 |
| HORVU6Hr1G077570.1 | Barley | mitochondrion | 65.76 | 61.47 |
| TraesCS7D01G177500.1 | Wheat | cytosol, plastid | 65.08 | 60.73 |
| EES05842 | Sorghum | plastid | 68.48 | 60.73 |
| KRH52925 | Soybean | cytosol | 60.65 | 60.65 |
| TraesCS7B01G081200.1 | Wheat | cytosol | 64.57 | 60.64 |
| TraesCS7A01G176200.1 | Wheat | cytosol | 64.4 | 60.58 |
| KRH62206 | Soybean | cytosol | 59.97 | 60.38 |
| Zm00001d052188_P001 | Maize | plastid | 68.48 | 60.36 |
| Zm00001d018126_P001 | Maize | plastid | 68.31 | 60.3 |
| TraesCS6B01G345800.1 | Wheat | plastid | 66.1 | 60.16 |
| TraesCS6A01G315300.1 | Wheat | plastid | 65.76 | 59.66 |
| TraesCS6D01G294600.1 | Wheat | plastid | 65.59 | 59.41 |
| PGSC0003DMT400005419 | Potato | cytosol | 62.01 | 59.38 |
| CDY21439 | Canola | cytosol | 60.82 | 59.11 |
| Solyc04g074980.2.1 | Tomato | cytosol | 62.52 | 58.91 |
| CDX83172 | Canola | cytosol, plastid | 60.82 | 58.81 |
| Bra000604.1-P | Field mustard | cytosol, plastid | 60.82 | 58.81 |
| KRH72427 | Soybean | cytosol | 63.03 | 58.73 |
| Bra013798.1-P | Field mustard | cytosol | 59.63 | 57.66 |
| CDY34286 | Canola | cytosol | 59.8 | 57.64 |
| CDY03450 | Canola | cytosol | 59.8 | 57.54 |
| KRH16819 | Soybean | cytosol | 62.69 | 57.5 |
| AT5G49980.1 | Thale cress | nucleus | 60.48 | 57.35 |
| AT4G24390.1 | Thale cress | cytosol, plastid | 60.82 | 57.3 |
| GSMUA_Achr9P01140_001 | Banana | cytosol | 46.68 | 51.41 |
| GSMUA_Achr6P08000_001 | Banana | cytosol | 46.68 | 51.41 |
| GSMUA_AchrUn_... | Banana | cytosol | 46.51 | 51.22 |
| GSMUA_Achr10P... | Banana | cytosol | 46.0 | 50.66 |
| GSMUA_Achr6P16510_001 | Banana | cytosol | 45.32 | 49.91 |
| GSMUA_Achr6P20580_001 | Banana | cytosol | 41.57 | 48.8 |
| GSMUA_Achr5P26930_001 | Banana | cytosol | 38.5 | 48.71 |
| GSMUA_Achr3P23850_001 | Banana | cytosol | 44.63 | 45.02 |
| GSMUA_Achr9P03690_001 | Banana | cytosol | 28.45 | 27.69 |
| GSMUA_Achr6P33630_001 | Banana | cytosol, mitochondrion, nucleus | 27.09 | 27.27 |
| GSMUA_Achr5P28930_001 | Banana | cytosol | 25.89 | 27.14 |
| GSMUA_Achr8P02350_001 | Banana | cytosol | 6.64 | 22.67 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P05520_001 | EnsemblPlants:GSMUA_Achr5T05520_001 | EnsemblPlantsGene:GSMUA_Achr5G05520_001 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR43944 | PANTHER:PTHR43944:SF8 | PFscan:PS51257 | SEG:seg | SUPFAM:SSF52047 | UniParc:UPI000294AE32 |
| UniProt:M0SVY1 | MapMan:11.2.2.1.1 | MapMan:19.2.2.8.1.4.6 | : | : | : |
Description
Transport inhibitor response 1-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G05520_001]
Coordinates
chr5:+:4109711..4115935
Molecular Weight (calculated)
65108.4 Da
IEP (calculated)
5.774
GRAVY (calculated)
-0.042
Length
587 amino acids
Sequence
(BLAST)
(BLAST)
001: MREERSDMSE DEDGGGGVEQ KERWGPSHGG GGGGCGSAKS RGGVWTDPPP PFSDQVLENV LENVLQFLVC RRDRNAASLG KPRFADFSLV PLGWGAHFSP
101: WASAMATAYP WLERICLKRM SIADYDLSLL AFSFPFFKDL TLICCDGFGT LGLAVIAEKC RHLRVLDLIE AYLEEEEEDE VVDWVSKFPQ TTTSLETLGF
201: DCVVSTVNFE ALEALVARSP ALRQLRVNHH VTVDQLFRLM VRAPQLTHLG TGSFGHPAAL ALQGDVMEHD ADLVSAFAAS KSIVSLSGFR DVASQYLPAI
301: YPVCANLTTL NCSFAEITAD ELKPVIHHCH NLQKFWVLDT VRDEGLQAVA ATCKDLRELR VFPLNATEDS EGFVSDVGLA AISQGCRRLR SILYFCQQMT
401: NKAVITMSKN CQELVVFRLC IMGRHLPDHL TKEPMDEGFG AIVMNCKKLT RLAVSGLLTD KAFGYIGKYG KSIRTLSVAF AGDSDVGLRY VLEGCPKLQK
501: LEIRDSPFGD PALLSGIHQY YNMRFLWMNS CKLSIRGCND VAQRLPRLIV EVIRDRPEAD DETVEKLYMY RSLAGPRNDA PPFVMIL
101: WASAMATAYP WLERICLKRM SIADYDLSLL AFSFPFFKDL TLICCDGFGT LGLAVIAEKC RHLRVLDLIE AYLEEEEEDE VVDWVSKFPQ TTTSLETLGF
201: DCVVSTVNFE ALEALVARSP ALRQLRVNHH VTVDQLFRLM VRAPQLTHLG TGSFGHPAAL ALQGDVMEHD ADLVSAFAAS KSIVSLSGFR DVASQYLPAI
301: YPVCANLTTL NCSFAEITAD ELKPVIHHCH NLQKFWVLDT VRDEGLQAVA ATCKDLRELR VFPLNATEDS EGFVSDVGLA AISQGCRRLR SILYFCQQMT
401: NKAVITMSKN CQELVVFRLC IMGRHLPDHL TKEPMDEGFG AIVMNCKKLT RLAVSGLLTD KAFGYIGKYG KSIRTLSVAF AGDSDVGLRY VLEGCPKLQK
501: LEIRDSPFGD PALLSGIHQY YNMRFLWMNS CKLSIRGCND VAQRLPRLIV EVIRDRPEAD DETVEKLYMY RSLAGPRNDA PPFVMIL
001: MTQDRSEMSE DDDDQQSPPL DLPSTAIADP CSSSSSPNKS RNCISNSQTF PDHVLENVLE NVLQFLDSRC DRNAASLVCK SWWRVEALTR SEVFIGNCYA
101: LSPARLTQRF KRVRSLVLKG KPRFADFNLM PPDWGANFAP WVSTMAQAYP CLEKVDLKRM FVTDDDLALL ADSFPGFKEL ILVCCEGFGT SGISIVANKC
201: RKLKVLDLIE SEVTDDEVDW ISCFPEDVTC LESLAFDCVE APINFKALEG LVARSPFLKK LRLNRFVSLV ELHRLLLGAP QLTSLGTGSF SHDEEPQSEQ
301: EPDYAAAFRA CKSVVCLSGF RELMPEYLPA IFPVCANLTS LNFSYANISP DMFKPIILNC HKLQVFWALD SICDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSELGL QAISEGCRKL ESILYFCQRM TNAAVIAMSE NCPELTVFRL CIMGRHRPDH VTGKPMDEGF GAIVKNCKKL TRLAVSGLLT DQAFRYMGEY
501: GKLVRTLSVA FAGDSDMALR HVLEGCPRLQ KLEIRDSPFG DVALRSGMHR YYNMRFVWMS ACSLSKGCCK DIARAMPNLV VEVIGSDDDD DNRDYVETLY
601: MYRSLDGPRN DAPKFVTIL
101: LSPARLTQRF KRVRSLVLKG KPRFADFNLM PPDWGANFAP WVSTMAQAYP CLEKVDLKRM FVTDDDLALL ADSFPGFKEL ILVCCEGFGT SGISIVANKC
201: RKLKVLDLIE SEVTDDEVDW ISCFPEDVTC LESLAFDCVE APINFKALEG LVARSPFLKK LRLNRFVSLV ELHRLLLGAP QLTSLGTGSF SHDEEPQSEQ
301: EPDYAAAFRA CKSVVCLSGF RELMPEYLPA IFPVCANLTS LNFSYANISP DMFKPIILNC HKLQVFWALD SICDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSELGL QAISEGCRKL ESILYFCQRM TNAAVIAMSE NCPELTVFRL CIMGRHRPDH VTGKPMDEGF GAIVKNCKKL TRLAVSGLLT DQAFRYMGEY
501: GKLVRTLSVA FAGDSDMALR HVLEGCPRLQ KLEIRDSPFG DVALRSGMHR YYNMRFVWMS ACSLSKGCCK DIARAMPNLV VEVIGSDDDD DNRDYVETLY
601: MYRSLDGPRN DAPKFVTIL
Arabidopsis Description
AFB5AFB5 [Source:UniProtKB/TrEMBL;Acc:A0A178UB83]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.