Factsheet for Bra013798.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra018296.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24390.1	Bra000214.1-P	AT2G41090.1	17360592
AT4G24390.1	Bra000214.1-P	AT2G41100.1	17360592
AT4G24390.1	Bra018296.1-P	AT3G51920.1	17360592
AT4G24390.1	Bra033467.1-P	AT3G51920.1	17360592
AT4G24390.1	Bra039723.1-P	AT4G14640.1	17360592
AT4G24390.1	Bra002368.1-P	AT5G21274.1	17360592
AT4G24390.1	Bra006595.1-P	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34286	Canola	cytosol	99.18	98.85
AT4G24390.1	Thale cress	cytosol, plastid	83.69	81.54
Bra000604.1-P	Field mustard	cytosol, plastid	77.1	77.1
VIT_18s0001g07120.t01	Wine grape	cytosol	69.52	71.04
KRH52925	Soybean	cytosol	62.77	64.91
KRH62206	Soybean	cytosol	62.11	64.67
PGSC0003DMT400005419	Potato	cytosol	65.07	64.44
KRH72427	Soybean	cytosol	66.72	64.29
Solyc04g074980.2.1	Tomato	cytosol	65.9	64.21
KRH16819	Soybean	cytosol	66.72	63.28
HORVU4Hr1G080360.1	Barley	cytosol, peroxisome, plastid	35.42	62.68
GSMUA_Achr3P06710_001	Banana	cytosol	58.65	62.13
Os03t0187500-01	Rice	cytosol	25.54	61.51
HORVU4Hr1G015730.1	Barley	cytosol, peroxisome, plastid	33.77	61.38
GSMUA_Achr7P11780_001	Banana	cytosol	57.99	59.66
GSMUA_Achr5P05520_001	Banana	cytosol	57.66	59.63
Os02t0759700-01	Rice	cytosol	61.61	58.71
HORVU6Hr1G077570.1	Barley	mitochondrion	59.64	57.64
TraesCS7B01G081200.1	Wheat	cytosol	58.98	57.28
TraesCS7A01G176200.1	Wheat	cytosol	58.81	57.21
TraesCS7D01G177500.1	Wheat	cytosol, plastid	59.14	57.07
TraesCS6B01G345800.1	Wheat	plastid	60.3	56.74
TraesCS6A01G315300.1	Wheat	plastid	60.46	56.72
TraesCS6D01G294600.1	Wheat	plastid	60.46	56.64
EES05842	Sorghum	plastid	61.28	56.19
Zm00001d018126_P001	Maize	plastid	61.12	55.79
Zm00001d052188_P001	Maize	plastid	61.12	55.71
TraesCS4D01G301800.1	Wheat	cytosol, nucleus, peroxisome	54.7	54.43
TraesCS4A01G001800.1	Wheat	cytosol	54.37	54.28
Zm00001d027975_P001	Maize	cytosol	52.39	53.18
EER92735	Sorghum	cytosol	52.22	52.66
Zm00001d048233_P001	Maize	cytosol	51.73	52.51
Bra032954.1-P	Field mustard	cytosol	47.12	49.74
Bra026953.1-P	Field mustard	cytosol	46.46	48.79
HORVU4Hr1G078120.4	Barley	cytosol, plastid	54.37	48.39
Bra016754.1-P	Field mustard	cytosol	46.62	47.97
Bra003518.1-P	Field mustard	cytosol	45.63	46.63
Bra000842.1-P	Field mustard	cytosol	44.48	46.08
Bra034191.1-P	Field mustard	cytosol	43.99	45.64
Bra007720.1-P	Field mustard	cytosol	44.65	45.55
Bra014378.1-P	Field mustard	cytosol	40.86	39.62
Bra000156.1-P	Field mustard	cytosol	29.0	29.83
Bra005000.1-P	Field mustard	cytosol	29.32	29.52
Bra017044.1-P	Field mustard	cytosol	28.01	28.15
Bra017045.1-P	Field mustard	cytosol	27.51	27.51

Protein Annotations

EnsemblPlants:Bra013798.1	EnsemblPlants:Bra013798.1-P	EnsemblPlantsGene:Bra013798	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944	PANTHER:PTHR43944:SF8	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI0002546290	UniProt:M4DBD8	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:

Description

AT4G24390 (E=9e-288) | F-box family protein (FBX14)

Coordinates

chrA01:-:7787197..7789662

Molecular Weight (calculated)

67839.1 Da

IEP (calculated)

5.099

GRAVY (calculated)

-0.152

Length

607 amino acids

Sequence
(BLAST)

001: MAEEEDLSEM TNDVERHLKL DPPKPSSSPP CPSHVLENVL ENVLKFLTTR RDRNAVSLVS RSWHHVEAQT RFEVFIGNCY SLSPARLTRR FTRVRSLFLK
101: GKPRFADFNL MPPDWGAQFA PWVAATARAY PWLEKVSLKR MFVSDDDLAL LAVSFPGFKE LVLLCCEGFG TSGVAVVANK CRQLKVLDLI ESEVTDDEVD
201: WISCFPEGET HLESLSFDCV ESPINFKALE GLVVRSPCLK KLRTNRFVSL EELHTLMVRA PQLTSLGTGA FSSTHDGAQG EQEPDYASAF RACRSLVCLS
301: GFRELTAEYL PAISPVCANL TSLNFSYANI SPDVFKPIIR NCHNIRVFWA LDSICDEGLQ AVAETCKELR ELRIFPFDPS EDSEGPVSGL GLQAISEGCK
401: KLESILYFCQ RMTNVAVTAM SENCPQLTVF RLCIMGRHRP DHVTGKPMDD GFGAIVKNCK KLTRLAVSGL LTDQAFSLIG EYGKLIRTLS VAFAGDSDMG
501: LRYILEGCPK LEKLEIRDSP FGDVGLRSGM HRYNDMRFVW MSSCRLSRGA CRDIAHTLPS VVVEAFGSDD DDDDDDEDDN ADYVETLYMY RSLDGPRKDA
601: PKFVTIL

Best Arabidopsis Sequence Match ( AT4G24390.2 )
(BLAST)

001: MTEEDSSAKM SEDVEKYLNL NPPCSSSSSS SSAATFTNKS RNFKSSPPPC PDHVLENVLE NVLQFLTSRC DRNAVSLVCR SWYRVEAQTR LEVFIGNCYS
101: LSPARLIHRF KRVRSLVLKG KPRFADFNLM PPNWGAQFSP WVAATAKAYP WLEKVHLKRM FVTDDDLALL AESFPGFKEL TLVCCEGFGT SGIAIVANKC
201: RQLKVLDLME SEVTDDELDW ISCFPEGETH LESLSFDCVE SPINFKALEE LVVRSPFLKK LRTNRFVSLE ELHRLMVRAP QLTSLGTGSF SPDNVPQGEQ
301: QPDYAAAFRA CKSIVCLSGF REFRPEYLLA ISSVCANLTS LNFSYANISP HMLKPIISNC HNIRVFWALD SIRDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSGVGL QAISEGCRKL ESILYFCQNM TNGAVTAMSE NCPQLTVFRL CIMGRHRPDH VTGKPMDDGF GAIVKNCKKL TRLAVSGLLT DEAFSYIGEY
501: GKLIRTLSVA FAGNSDKALR YVLEGCPKLQ KLEIRDSPFG DVGLRSGMHR YSNMRFVWLS SCLISRGGCR GVSHALPNVV VEVFGADGDD DEDTVTGDYV
601: ETLYLYRSLD GPRKDAPKFV TIL

Arabidopsis Description

FBX14F-box protein FBX14 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWQ8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.