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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000156.1-P
Bra000874.1-P
Bra003735.1-P
Bra003778.1-P
Bra005000.1-P
Bra006010.1-P
Bra006246.1-P
Bra006326.1-P
Bra008172.1-P
Bra008231.1-P
Bra009354.1-P
Bra015801.1-P
Bra015880.1-P
Bra017044.1-P
Bra017045.1-P
Bra022254.1-P
Bra023453.1-P
Bra025713.1-P
Bra032760.1-P
Bra033654.1-P
Bra035336.1-P
Bra035858.1-P
Bra036257.1-P
Bra038444.1-P
Bra038607.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G39940.1 Bra025713.1-P AT1G19180.1 17637677
AT2G39940.1 Bra025713.1-P AT1G19180.1 18547396
AT2G39940.1 Bra003778.1-P AT1G74950.1 18547396
AT2G39940.1 Bra008172.1-P AT1G74950.1 18547396
AT2G39940.1 Bra015880.1-P AT1G74950.1 18547396
AT2G39940.1 Bra003735.1-P AT1G75950.1 12172031
AT2G39940.1 Bra008231.1-P AT1G75950.1 12172031
AT2G39940.1 Bra015801.1-P AT1G75950.1 12172031
AT2G39940.1 Bra003735.1-P AT1G75950.1 12445118
AT2G39940.1 Bra008231.1-P AT1G75950.1 12445118
AT2G39940.1 Bra015801.1-P AT1G75950.1 12445118
AT2G39940.1 Bra003735.1-P AT1G75950.1 14749489
AT2G39940.1 Bra008231.1-P AT1G75950.1 14749489
AT2G39940.1 Bra015801.1-P AT1G75950.1 14749489
AT2G39940.1 Bra000156.1-P AT2G39940.1 12724535
AT2G39940.1 Bra005000.1-P AT2G39940.1 12724535
AT2G39940.1 Bra017044.1-P AT2G39940.1 12724535
AT2G39940.1 Bra017045.1-P AT2G39940.1 12724535
AT2G39940.1 Bra022254.1-P AT3G17860.1 17637675
AT2G39940.1 Bra022254.1-P AT3G17860.1 18547396
AT2G39940.1 Bra022254.1-P AT3G17860.1 19309455
AT2G39940.1 Bra000874.1-P AT4G02570.1 12172031
AT2G39940.1 Bra036257.1-P AT4G02570.1 12172031
AT2G39940.1 Bra000874.1-P AT4G02570.1 12445118
AT2G39940.1 Bra036257.1-P AT4G02570.1 12445118
AT2G39940.1 Bra000874.1-P AT4G02570.1 12724535
AT2G39940.1 Bra036257.1-P AT4G02570.1 12724535
AT2G39940.1 Bra032760.1-P AT4G14110.1 12724535
AT2G39940.1 Bra038444.1-P AT4G14110.1 12724535
AT2G39940.1 Bra006010.1-P AT5G08590.1 12172031
AT2G39940.1 Bra009354.1-P AT5G08590.1 12172031
AT2G39940.1 Bra006010.1-P AT5G08590.1 14749489
AT2G39940.1 Bra009354.1-P AT5G08590.1 14749489
AT2G39940.1 Bra006246.1-P AT5G14250.1 12724535
AT2G39940.1 Bra006326.1-P AT5G14250.1 12724535
AT2G39940.1 Bra023453.1-P AT5G14250.1 12724535
AT2G39940.1 Bra033654.1-P AT5G42970.1 12724535
AT2G39940.1 Bra035336.1-P AT5G42970.1 12724535
AT2G39940.1 Bra035858.1-P AT5G63110.1 12445118
AT2G39940.1 Bra038607.1-P AT5G63110.1 12445118
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX74819 Canola cytosol 99.5 100.0
CDY20501 Canola cytosol 98.51 98.67
Bra000156.1-P Field mustard cytosol 90.38 92.37
AT2G39940.1 Thale cress cytosol 88.72 90.37
Bra017044.1-P Field mustard cytosol 81.09 80.96
Bra017045.1-P Field mustard cytosol 79.1 78.58
KRH14993 Soybean cytosol 65.84 69.89
KRH73146 Soybean cytosol 67.5 69.69
KRH31107 Soybean cytosol 67.66 69.15
VIT_13s0019g03380.t01 Wine grape cytosol 68.49 69.06
KRG97777 Soybean cytosol 67.33 68.81
Solyc05g052620.2.1 Tomato cytosol 67.0 67.0
GSMUA_Achr6P33630_001 Banana cytosol, mitochondrion, nucleus 61.03 63.12
GSMUA_Achr5P28930_001 Banana cytosol 57.88 62.32
GSMUA_Achr9P03690_001 Banana cytosol 61.03 61.03
HORVU4Hr1G060950.3 Barley cytosol 54.56 56.14
TraesCS4B01G213500.1 Wheat cytosol 54.23 55.8
TraesCS4A01G091200.1 Wheat cytosol 54.06 55.63
TraesCS4D01G214200.1 Wheat cytosol 54.06 55.63
Os05t0449500-01 Rice cytosol 55.06 55.61
Zm00001d042833_P001 Maize cytosol 55.06 55.52
EES18318 Sorghum cytosol 55.06 55.43
TraesCS3A01G367500.1 Wheat cytosol 51.08 55.3
Os01t0853400-01 Rice cytosol 54.56 55.29
GSMUA_Achr8P02350_001 Banana cytosol 15.75 55.23
Zm00001d012338_P001 Maize cytosol 54.39 55.03
Zm00001d038273_P001 Maize cytosol 54.56 54.92
TraesCS3B01G399200.1 Wheat cytosol 54.06 54.88
HORVU3Hr1G085210.2 Barley cytosol 54.06 54.88
HORVU1Hr1G073230.1 Barley cytosol 53.73 54.82
TraesCS3D01G360400.2 Wheat cytosol 54.06 54.79
Zm00001d010082_P001 Maize cytosol 54.39 54.76
TraesCS1B01G288100.1 Wheat cytosol 53.4 54.39
TraesCS1D01G278400.1 Wheat cytosol 53.4 54.39
EES01769 Sorghum cytosol 53.73 54.36
Os03t0265500-01 Rice plasma membrane 53.07 54.33
TraesCS1A01G279100.1 Wheat cytosol 53.23 54.22
EER95129 Sorghum cytosol 52.57 53.64
Zm00001d028543_P001 Maize cytosol 52.07 53.13
Zm00001d047848_P001 Maize cytosol 51.74 52.79
Bra032954.1-P Field mustard cytosol 30.35 31.83
Bra026953.1-P Field mustard cytosol 30.35 31.66
Bra003518.1-P Field mustard cytosol 31.18 31.65
Bra007720.1-P Field mustard cytosol 31.01 31.43
Bra016754.1-P Field mustard cytosol 30.02 30.68
Bra000842.1-P Field mustard cytosol 29.19 30.03
Bra034191.1-P Field mustard cytosol 29.02 29.91
Bra000604.1-P Field mustard cytosol, plastid 29.68 29.49
Bra013798.1-P Field mustard cytosol 29.52 29.32
Bra014378.1-P Field mustard cytosol 29.02 27.96
Protein Annotations
EnsemblPlants:Bra005000.1EnsemblPlants:Bra005000.1-PEnsemblPlantsGene:Bra005000Gene3D:1.20.1280.50Gene3D:3.80.10.10InterPro:IPR032675
InterPro:LRR_dom_sfPANTHER:PTHR43944PANTHER:PTHR43944:SF6SUPFAM:SSF52047UniParc:UPI00025472F5UniProt:M4CLB3
MapMan:11.7.2.1.1:::::
Description
AT2G39940 (E=2e-311) COI1 | COI1 (CORONATINE INSENSITIVE 1); protein binding / ubiquitin-protein ligase
Coordinates
chrA05:+:2900595..2903550
Molecular Weight (calculated)
68916.0 Da
IEP (calculated)
7.349
GRAVY (calculated)
-0.232
Length
603 amino acids
Sequence
(BLAST)
001: MEDPDIKKCR LTPKKMIIAT PPLSLSVDDV IEQVMPYITD SKDRDSASLV CRRWFKIDSE TREHVTMALC YTSTPDRLSR RFPNLRSLKL KGKPRAAMFN
101: LIPENWGGFV TPWVNEIAAS LRRLKSVHFR RMIVSDLDLD VLAKSRLDEL EALKLDKCSG FSTDGLLSIV KHCRRIKTLL MEESSFLEKD GQWLHELALH
201: NTSLEVLNFY MTEFNKISPK DLETIARNCR RSLISVKVGD LEILELVGFF KAATNLEEFC GGSLNEDIGR PEKYMNLTFP PKLCRLGLSY LGANEMPILF
301: PFAAQIRKLD LLYALLETED HCTLIQKCPN LEVLETRNVI GDRGLEVLAQ HCKKLKRLRI ERGADEQGME DEEGLVSQRG LIALAQGCQE LEYMAVYVSD
401: ITNESLESIG THLKNLCDFR LVLLDREERI TDLPLDNGVR SLLIGCKKLR RFAFYLRQGG LTDVGLSYIG RYSPNVRWML LGYVGETDEG LMEFSRGCPS
501: LQKLEMRGCC FSERAIAAAV MRLPSLRYLW VQGYRASTRG QDLRLMSRPY WNIELIPSRR VPEVNQLGEV REMEHPAHIL AYYSLAGERT DCPPTVKVLK
601: EET
Best Arabidopsis Sequence Match ( AT2G39940.1 )
(BLAST)
001: MEDPDIKRCK LSCVATVDDV IEQVMTYITD PKDRDSASLV CRRWFKIDSE TREHVTMALC YTATPDRLSR RFPNLRSLKL KGKPRAAMFN LIPENWGGYV
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI
Arabidopsis Description
COI1Coronatine-insensitive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04197]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.