Factsheet for Os05t0449500-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0853400-01
Os01t0935300-02
Os02t0551100-01
Os03t0197400-01
Os03t0265500-01
Os03t0402800-01
Os04t0428900-01
Os04t0432000-02
Os05t0193900-00
Os05t0449500-01
Os07t0615200-01
Os08t0119000-01
Os08t0344100-01
Os08t0428400-01
Os09t0439200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39940.1	Os03t0402800-01	AT1G19180.1	17637677
AT2G39940.1	Os07t0615200-01	AT1G19180.1	17637677
AT2G39940.1	Os09t0439200-01	AT1G19180.1	17637677
AT2G39940.1	Os03t0402800-01	AT1G19180.1	18547396
AT2G39940.1	Os07t0615200-01	AT1G19180.1	18547396
AT2G39940.1	Os09t0439200-01	AT1G19180.1	18547396
AT2G39940.1	Os03t0402800-01	AT1G74950.1	18547396
AT2G39940.1	Os07t0615200-01	AT1G74950.1	18547396
AT2G39940.1	Os09t0439200-01	AT1G74950.1	18547396
AT2G39940.1	Os01t0853400-01	AT2G39940.1	12724535
AT2G39940.1	Os03t0265500-01	AT2G39940.1	12724535
AT2G39940.1	Os05t0449500-01	AT2G39940.1	12724535
AT2G39940.1	Os08t0428400-01	AT3G17860.1	17637675
AT2G39940.1	Os08t0428400-01	AT3G17860.1	18547396
AT2G39940.1	Os08t0428400-01	AT3G17860.1	19309455
AT2G39940.1	Os01t0935300-02	AT4G02570.1	12172031
AT2G39940.1	Os05t0193900-00	AT4G02570.1	12172031
AT2G39940.1	Os01t0935300-02	AT4G02570.1	12445118
AT2G39940.1	Os05t0193900-00	AT4G02570.1	12445118
AT2G39940.1	Os01t0935300-02	AT4G02570.1	12724535
AT2G39940.1	Os05t0193900-00	AT4G02570.1	12724535
AT2G39940.1	Os04t0428900-01	AT4G14110.1	12724535
AT2G39940.1	Os02t0551100-01	AT5G08590.1	12172031
AT2G39940.1	Os04t0432000-02	AT5G08590.1	12172031
AT2G39940.1	Os02t0551100-01	AT5G08590.1	14749489
AT2G39940.1	Os04t0432000-02	AT5G08590.1	14749489
AT2G39940.1	Os08t0119000-01	AT5G14250.1	12724535
AT2G39940.1	Os03t0197400-01	AT5G42970.1	12724535
AT2G39940.1	Os08t0344100-01	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G278400.1	Wheat	cytosol	86.43	87.16
EES18318	Sorghum	cytosol	87.27	86.98
TraesCS1B01G288100.1	Wheat	cytosol	85.93	86.66
Zm00001d038273_P001	Maize	cytosol	86.93	86.64
TraesCS1A01G279100.1	Wheat	cytosol	85.76	86.49
Zm00001d010082_P001	Maize	cytosol	86.43	86.14
HORVU1Hr1G073230.1	Barley	cytosol	84.42	85.28
Os01t0853400-01	Rice	cytosol	82.24	82.52
GSMUA_Achr6P33630_001	Banana	cytosol, mitochondrion, nucleus	68.68	70.33
GSMUA_Achr5P28930_001	Banana	cytosol	63.82	68.04
GSMUA_Achr9P03690_001	Banana	cytosol	68.34	67.66
Os03t0265500-01	Rice	plasma membrane	63.15	64.01
VIT_13s0019g03380.t01	Wine grape	cytosol	61.98	61.87
KRG97777	Soybean	cytosol	59.13	59.83
KRH31107	Soybean	cytosol	59.13	59.83
KRH14993	Soybean	cytosol	56.11	58.98
KRH73146	Soybean	cytosol	57.29	58.56
GSMUA_Achr8P02350_001	Banana	cytosol	16.58	57.56
Solyc05g052620.2.1	Tomato	cytosol	57.79	57.21
AT2G39940.1	Thale cress	cytosol	56.62	57.09
CDY24941	Canola	cytosol	56.11	56.78
Bra000156.1-P	Field mustard	cytosol	55.95	56.61
CDY20501	Canola	cytosol	55.78	55.32
Bra005000.1-P	Field mustard	cytosol	55.61	55.06
CDX74819	Canola	cytosol	55.28	55.0
CDX93223	Canola	cytosol	54.44	54.99
CDX93225	Canola	cytosol	54.61	54.88
CDY07041	Canola	cytosol	54.1	54.56
CDY07040	Canola	cytosol	55.11	54.2
Bra017045.1-P	Field mustard	cytosol	54.77	53.87
Bra017044.1-P	Field mustard	cytosol	53.94	53.31
CDY60996	Canola	endoplasmic reticulum, golgi	55.78	47.37
Os11t0515500-01	Rice	cytosol	31.49	33.1
Os03t0187500-01	Rice	cytosol	13.57	32.14
Os04t0395600-01	Rice	cytosol	30.65	31.83
Os05t0150500-00	Rice	plastid	29.65	30.15
Os02t0759700-01	Rice	cytosol	31.49	29.51

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.7.2.1.1	Gene3D:3.80.10.10	EntrezGene:4338955	ProteinID:AAU90110.1	EMBL:AK101514
ProteinID:BAF17614.1	ProteinID:BAS94315.1	ProteinID:EEE63917.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006950	GO:GO:0006952	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009719	GO:GO:0009987	GO:GO:2000022	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	EnsemblPlantsGene:Os05g0449500	EnsemblPlants:Os05t0449500-01	PFAM:PF12937	PANTHER:PTHR43944
PANTHER:PTHR43944:SF3	UniProt:Q60EH4	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0000034BAD
RefSeq:XP_015639870.1	SEG:seg	:	:	:	:

Description

coronatine insensitive 1b, F-box protein 260Component of the SCF E3 ubiquitin ligase complex, Jasmonate-regulated defense responses, Regulation of leaf senescence (Os05t0449500-01)

Coordinates

chr5:+:22060910..22063720

Molecular Weight (calculated)

66265.4 Da

IEP (calculated)

6.965

GRAVY (calculated)

-0.037

Length

597 amino acids

Sequence
(BLAST)

001: MGGEAPEARR LDRAMSFGGA GSIPEEALHL VLGYVDDPRD REAVSLVCRR WHRIDALTRK HVTVPFCYAA SPAHLLARFP RLESLAVKGK PRAAMYGLIP
101: EDWGAYARPW VAELAAPLEC LKALHLRRMV VTDDDLAALV RARGHMLQEL KLDKCSGFST DALRLVARSC RSLRTLFLEE CSIADNGTEW LHDLAVNNPV
201: LETLNFHMTE LTVVPADLEL LAKKCKSLIS LKISDCDFSD LIGFFRMAAS LQEFAGGAFI EQGELTKYGN VKFPSRLCSL GLTYMGTNEM PIIFPFSALL
301: KKLDLQYTFL TTEDHCQLIA KCPNLLVLAV RNVIGDRGLG VVADTCKKLQ RLRVERGDDD PGLQEEQGGV SQVGLTTVAV GCRELEYIAA YVSDITNGAL
401: ESIGTFCKNL CDFRLVLLDR EERITDLPLD NGVRALLRGC TKLRRFALYL RPGGLSDTGL GYIGQYSGII QYMLLGNVGE TDDGLIRFAL GCENLRKLEL
501: RSCCFSEQAL ARAIRSMPSL RYVWVQGYKA SKTGHDLMLM ARPFWNIEFT PPSSENANRM REDGEPCVDS QAQILAYYSL AGKRSDCPRS VVPLYPA

Best Arabidopsis Sequence Match ( AT2G39940.1 )
(BLAST)

001: MEDPDIKRCK LSCVATVDDV IEQVMTYITD PKDRDSASLV CRRWFKIDSE TREHVTMALC YTATPDRLSR RFPNLRSLKL KGKPRAAMFN LIPENWGGYV
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI

Arabidopsis Description

COI1Coronatine-insensitive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04197]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.