Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 2
- plastid 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0706200-01 | Rice | cytosol | 9.93 | 25.0 |
| AT1G59790.1 | Thale cress | cytosol | 20.6 | 22.19 |
| Os01t0369200-01 | Rice | cytosol | 40.94 | 22.12 |
| Os01t0935300-02 | Rice | cytosol | 14.14 | 19.0 |
| KRG96405 | Soybean | cytosol | 32.51 | 17.75 |
| AT4G02570.1 | Thale cress | cytosol | 32.26 | 17.62 |
| Bra000874.1-P | Field mustard | cytosol | 32.01 | 17.48 |
| CDX90932 | Canola | cytosol | 32.01 | 17.48 |
| CDY18013 | Canola | cytosol | 32.01 | 17.48 |
| Os01t0369000-01 | Rice | cytosol | 32.26 | 17.47 |
| KRH68142 | Soybean | cytosol | 32.01 | 17.41 |
| CDY22060 | Canola | cytosol | 31.76 | 17.34 |
| CDY21896 | Canola | cytosol | 31.76 | 17.34 |
| GSMUA_Achr9P17620_001 | Banana | cytosol | 28.04 | 15.33 |
| Bra036257.1-P | Field mustard | cytosol, nucleus, peroxisome | 31.76 | 12.98 |
| Os04t0643000-01 | Rice | cytosol, plasma membrane | 22.58 | 12.45 |
| Os08t0170900-01 | Rice | cytosol | 22.33 | 12.31 |
| Os02t0746000-01 | Rice | cytosol | 22.08 | 12.09 |
| Os05t0149600-02 | Rice | cytosol, plasma membrane | 4.22 | 6.56 |
| Os03t0786800-01 | Rice | cytosol, plasma membrane | 2.23 | 5.81 |
Protein Annotations
| Gene3D:1.20.1310.10 | MapMan:35.1 | UniProt:A0A0P0WIW4 | ProteinID:BAS92659.1 | InterPro:Cullin_N | InterPro:Cullin_repeat-like_dom_sf |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0031625 | EnsemblPlantsGene:Os05g0193900 | EnsemblPlants:Os05t0193900-00 |
| PFAM:PF00888 | PANTHER:PTHR11932 | PANTHER:PTHR11932:SF83 | SUPFAM:SSF74788 | UniParc:UPI0003938CAA | SEG:seg |
Description
Hypothetical conserved gene. (Os05t0193900-00)
Coordinates
chr5:-:5756504..5760603
Molecular Weight (calculated)
45995.0 Da
IEP (calculated)
6.309
GRAVY (calculated)
-0.452
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTGQVHRGR EGAAVESHGE DLLSVLPDEI LLHIRLARWR GARGGGVLDL EEGWRDVLAG VAKLKSIHTD SDFGGFSPDE YMHIYTLVYY MCTQKGHKDY
101: PKELYHLCKQ ALDDHLDSIV LPSLNEKHGN FLLAEMLQSW EKHKLMVRWL RRFFDYLDRV SITWKSLHSL EHMGWIGFRD MINDERNGLL IDRALLKNVI
201: HMCNEFGDSE LNSYPEYILK AEECLQKEKE QVYSHSTTEP KDTSDKGMAL VKHGTDTAKS RKDKKNEVMV GFPINLISGS RVVDEILGRV PVKAPFTDST
301: FEFGNSSCNP PDSFGYIPTT SKSFAERLMA PENEDLVVML SLDLAEELET IDEVYQQISR KGERGSSKLW KFIDHGVKKC TQIRRSITLL GGSPQEIPNY
401: LIR
101: PKELYHLCKQ ALDDHLDSIV LPSLNEKHGN FLLAEMLQSW EKHKLMVRWL RRFFDYLDRV SITWKSLHSL EHMGWIGFRD MINDERNGLL IDRALLKNVI
201: HMCNEFGDSE LNSYPEYILK AEECLQKEKE QVYSHSTTEP KDTSDKGMAL VKHGTDTAKS RKDKKNEVMV GFPINLISGS RVVDEILGRV PVKAPFTDST
301: FEFGNSSCNP PDSFGYIPTT SKSFAERLMA PENEDLVVML SLDLAEELET IDEVYQQISR KGERGSSKLW KFIDHGVKKC TQIRRSITLL GGSPQEIPNY
401: LIR
001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA
Arabidopsis Description
CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.