Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0935300-02 | |
| Os05t0193900-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | Os01t0935300-02 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | Os05t0193900-00 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G287400.1 | Wheat | cytosol | 55.2 | 59.13 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 57.51 | 58.36 |
| OQU80048 | Sorghum | cytosol | 46.24 | 56.14 |
| Os08t0193900-01 | Rice | nucleus | 53.76 | 46.97 |
| CDY21989 | Canola | cytosol | 10.12 | 43.21 |
| Os02t0317300-01 | Rice | cytosol | 37.57 | 39.63 |
| Os02t0317500-01 | Rice | cytosol | 35.84 | 37.58 |
| Bra000817.1-P | Field mustard | plastid | 19.36 | 37.22 |
| CDY48580 | Canola | cytosol | 32.37 | 36.48 |
| CDX99649 | Canola | cytosol | 24.28 | 36.05 |
| Bra030342.1-P | Field mustard | cytosol | 23.99 | 35.62 |
| CDY15937 | Canola | cytosol | 23.99 | 35.62 |
| CDY21333 | Canola | nucleus, plastid | 30.06 | 35.37 |
| CDY48578 | Canola | cytosol | 25.43 | 35.06 |
| CDY48576 | Canola | cytosol | 30.06 | 35.02 |
| AT4G03630.1 | Thale cress | cytosol | 22.25 | 35.0 |
| PGSC0003DMT400058969 | Potato | cytosol | 8.96 | 34.83 |
| KRH21099 | Soybean | cytosol | 31.21 | 34.73 |
| Bra034226.1-P | Field mustard | cytosol | 28.9 | 34.72 |
| Bra034228.1-P | Field mustard | cytosol | 29.77 | 34.68 |
| CDY21986 | Canola | cytosol, plastid | 30.06 | 34.67 |
| Bra034230.1-P | Field mustard | cytosol | 26.3 | 34.6 |
| AT4G05460.1 | Thale cress | cytosol | 29.77 | 34.11 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 25.43 | 33.98 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 31.5 | 33.96 |
| Bra034229.1-P | Field mustard | cytosol | 26.88 | 33.7 |
| Bra034227.1-P | Field mustard | plastid | 30.92 | 33.65 |
| CDY48575 | Canola | plastid | 30.64 | 33.44 |
| AT4G05490.1 | Thale cress | plastid | 29.48 | 33.22 |
| CDY48574 | Canola | cytosol | 28.61 | 33.22 |
| Os08t0194350-00 | Rice | cytosol | 25.43 | 33.08 |
| CDX90789 | Canola | cytosol | 28.61 | 32.89 |
| KRH11147 | Soybean | cytosol | 30.06 | 32.7 |
| Solyc08g013780.1.1 | Tomato | cytosol | 11.56 | 32.52 |
| CDX86473 | Canola | cytosol | 23.99 | 32.42 |
| CDY59275 | Canola | plastid | 30.06 | 32.4 |
| PGSC0003DMT400015035 | Potato | cytosol | 28.61 | 32.35 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 28.32 | 32.03 |
| Bra000816.1-P | Field mustard | plastid | 30.06 | 32.0 |
| CDY09910 | Canola | nucleus | 29.48 | 31.88 |
| AT4G05497.1 | Thale cress | plastid | 22.54 | 31.71 |
| CDX73787 | Canola | cytosol | 23.41 | 31.64 |
| Solyc08g006940.2.1 | Tomato | cytosol | 28.32 | 31.51 |
| CDY15618 | Canola | cytosol | 25.43 | 31.32 |
| Bra030690.1-P | Field mustard | cytosol | 25.43 | 31.32 |
| Os08t0193200-00 | Rice | cytosol | 10.4 | 31.3 |
| CDY48577 | Canola | cytosol | 25.43 | 31.21 |
| CDY21988 | Canola | cytosol | 13.58 | 31.13 |
| PGSC0003DMT400090939 | Potato | cytosol | 27.17 | 31.02 |
| CDY62000 | Canola | plastid | 29.48 | 31.0 |
| CDX77948 | Canola | cytosol | 15.03 | 30.77 |
| AT4G05475.1 | Thale cress | cytosol | 27.46 | 30.74 |
| PGSC0003DMT400016134 | Potato | cytosol | 25.72 | 30.69 |
| Solyc08g013800.2.1 | Tomato | cytosol | 26.01 | 30.61 |
| Bra000723.1-P | Field mustard | cytosol | 13.29 | 30.26 |
| CDY10283 | Canola | cytosol | 27.17 | 29.94 |
| AT5G52480.1 | Thale cress | cytosol | 20.52 | 29.46 |
| PGSC0003DMT400052833 | Potato | cytosol | 23.41 | 29.45 |
| Os11t0637300-00 | Rice | cytosol | 10.12 | 29.17 |
| CDY06267 | Canola | nucleus | 29.19 | 29.02 |
| Os08t0193500-00 | Rice | cytosol | 18.21 | 28.77 |
| Bra031582.1-P | Field mustard | nucleus | 28.9 | 28.57 |
| PGSC0003DMT400015030 | Potato | cytosol | 24.28 | 28.38 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 24.57 | 28.15 |
| PGSC0003DMT400054358 | Potato | cytosol | 27.17 | 27.73 |
| Solyc08g013820.2.1 | Tomato | cytosol | 28.03 | 26.08 |
| CDY21990 | Canola | cytosol | 13.58 | 24.48 |
| CDY21983 | Canola | cytosol | 19.36 | 23.67 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 16.47 | 22.8 |
| Os08t0191300-00 | Rice | cytosol, golgi | 16.76 | 22.57 |
| Os08t0193300-00 | Rice | cytosol | 19.36 | 20.12 |
| Bra034194.1-P | Field mustard | cytosol | 30.92 | 20.0 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 17.34 | 19.8 |
| Bra020205.1-P | Field mustard | plastid | 30.06 | 18.34 |
| CDY09154 | Canola | plastid | 30.06 | 18.34 |
| CDY22112 | Canola | cytosol | 24.28 | 17.43 |
| Os08t0196200-01 | Rice | cytosol | 12.43 | 15.69 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 0.87 | 0.79 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:4344872 | ProteinID:BAD03409.1 | ProteinID:BAD03684.1 |
| ProteinID:BAF23099.1 | ProteinID:BAT04213.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | EnsemblPlantsGene:Os08g0195800 |
| EnsemblPlants:Os08t0195800-00 | PFAM:PF12937 | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF1 | UniProt:Q6Z072 | SMART:SM00367 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI00002260E3 | RefSeq:XP_015649497.1 | SEG:seg | : |
Description
F-box protein 417Cyclin-like F-box domain containing protein. (Os08t0195800-00)
Coordinates
chr8:-:5572031..5574384
Molecular Weight (calculated)
39356.2 Da
IEP (calculated)
5.553
GRAVY (calculated)
-0.592
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSSSSRRRR RRGRRRKKKE EEARDWADGL PLDAILAIFH KLGHADILMA ADQVCATWRR AARDEPALWR RITVRGTEAL SARINRGGLA CAAVRRSAGQ
101: CEAFCGEYAG DDGFLVYLTE QASCLKSLRL ISCLGVSNEG IEEATKEFPL LEELELSFCY NVTHEAYAAI GAACPQLKRF RLSKRSFYDS GGIRWKNNDD
201: AGGISKMHGL RSLQLFANNL TNEGLSTILD NCPNLESLDI RHCFNIDMGA DSLRAKCSRI KMLRPPDDST DDYDFDVYTP RRLPISPGFV RYYSVYSDPE
301: YSMYSDEWTS EEFDDDDDDY SGPSRYEEDL DKYDNALPRC MRTFLK
101: CEAFCGEYAG DDGFLVYLTE QASCLKSLRL ISCLGVSNEG IEEATKEFPL LEELELSFCY NVTHEAYAAI GAACPQLKRF RLSKRSFYDS GGIRWKNNDD
201: AGGISKMHGL RSLQLFANNL TNEGLSTILD NCPNLESLDI RHCFNIDMGA DSLRAKCSRI KMLRPPDDST DDYDFDVYTP RRLPISPGFV RYYSVYSDPE
301: YSMYSDEWTS EEFDDDDDDY SGPSRYEEDL DKYDNALPRC MRTFLK
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.