Skip to main content
crop-pal logo
Sorghum
Search for another protein from :
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
EES04173

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G05460.1 EES04173 AT4G02570.1 12795696
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os08t0195800-00 Rice cytosol, mitochondrion, nucleus 56.14 46.24
TraesCS7B01G287400.1 Wheat cytosol 51.58 45.51
TraesCS7D01G381100.1 Wheat mitochondrion 49.82 41.64
EES14679 Sorghum nucleus 48.42 40.12
OQU80176 Sorghum mitochondrion 30.53 39.01
Bra000723.1-P Field mustard cytosol 18.6 34.87
PGSC0003DMT400058969 Potato cytosol 10.53 33.71
AT4G03630.1 Thale cress cytosol 23.86 30.91
CDY21989 Canola cytosol 8.77 30.86
Bra000817.1-P Field mustard plastid 18.95 30.0
AT5G52480.1 Thale cress cytosol 23.16 27.39
CDX90789 Canola cytosol 28.77 27.24
KXG24675 Sorghum cytosol 27.02 26.74
VIT_10s0003g04300.t01 Wine grape cytosol 29.82 26.48
CDY48580 Canola cytosol 28.42 26.38
CDX73787 Canola cytosol 23.51 26.17
Solyc08g013780.1.1 Tomato cytosol 11.23 26.02
CDY21333 Canola nucleus, plastid 26.67 25.85
EES17669 Sorghum cytosol 29.82 25.6
EES14677 Sorghum cytosol, mitochondrion, nucleus, plastid 42.11 25.53
KRH21099 Soybean cytosol 27.72 25.4
CDX86473 Canola cytosol 22.81 25.39
CDY15937 Canola cytosol 20.7 25.32
CDX99649 Canola cytosol 20.7 25.32
CDY48574 Canola cytosol 26.32 25.17
PGSC0003DMT400090939 Potato cytosol 26.67 25.08
Bra030690.1-P Field mustard cytosol 24.56 24.91
CDY15618 Canola cytosol 24.56 24.91
Bra030342.1-P Field mustard cytosol 20.35 24.89
AT4G05460.1 Thale cress cytosol 26.32 24.83
Solyc08g006940.2.1 Tomato cytosol 27.02 24.76
CDY62000 Canola plastid 28.42 24.62
KRH11147 Soybean cytosol 27.37 24.53
Bra034227.1-P Field mustard plastid 27.37 24.53
Bra034230.1-P Field mustard cytosol 22.46 24.33
CDY48578 Canola cytosol 21.4 24.3
Bra000816.1-P Field mustard plastid 27.37 24.0
CDY59275 Canola plastid 27.02 23.99
CDY48575 Canola plastid 26.67 23.97
Bra034226.1-P Field mustard cytosol 24.21 23.96
Bra034231.1-P Field mustard cytosol, plastid 21.4 23.55
Bra034229.1-P Field mustard cytosol 22.81 23.55
PGSC0003DMT400052833 Potato cytosol 22.46 23.27
CDY48576 Canola cytosol 23.51 22.56
PGSC0003DMT400015035 Potato cytosol 24.21 22.55
Solyc08g013800.2.1 Tomato cytosol 23.16 22.45
CDY48577 Canola cytosol 22.11 22.34
CDY21986 Canola cytosol, plastid 23.51 22.33
Bra034228.1-P Field mustard cytosol 23.16 22.22
CDY09910 Canola nucleus 24.91 22.19
AT4G05490.1 Thale cress plastid 23.51 21.82
PGSC0003DMT400016134 Potato cytosol 21.75 21.38
CDY21983 Canola cytosol 21.05 21.2
CDY21988 Canola cytosol 11.23 21.19
AT4G05475.1 Thale cress cytosol 22.81 21.04
CDY10283 Canola cytosol 23.16 21.02
KXG24670 Sorghum cytosol 23.16 20.82
PGSC0003DMT400015030 Potato cytosol 21.4 20.61
PGSC0003DMT400054358 Potato cytosol 23.86 20.06
AT4G05497.1 Thale cress plastid 17.19 19.92
CDY06267 Canola nucleus 24.21 19.83
Bra031582.1-P Field mustard nucleus 24.21 19.71
AT4G05470.1 Thale cress cytosol, plastid 20.7 19.28
CDX77948 Canola cytosol 11.23 18.93
Solyc08g013820.2.1 Tomato cytosol 24.21 18.55
Solyc08g006920.1.1 Tomato cytosol, mitochondrion, nucleus 17.89 16.83
OQU80174 Sorghum cytosol 7.02 14.93
Bra034194.1-P Field mustard cytosol 25.96 13.83
Bra020205.1-P Field mustard plastid 27.02 13.58
CDY09154 Canola plastid 27.02 13.58
CDY21990 Canola cytosol 8.77 13.02
CDY22112 Canola cytosol 20.35 12.03
Os08t0196200-01 Rice cytosol 4.91 5.11
Protein Annotations
EnsemblPlants:OQU80048EnsemblPlantsGene:SORBI_3007G070900Gene3D:3.80.10.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR001611InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rptPANTHER:PTHR44078PANTHER:PTHR44078:SF1
PFAM:PF13516ProteinID:OQU80048ProteinID:OQU80048.1SEG:segSUPFAM:SSF52047UniParc:UPI000B8BA0FD
UniProt:A0A1Z5R8H1MapMan:35.1::::
Description
hypothetical protein
Coordinates
chr7:-:7861480..7864348
Molecular Weight (calculated)
32274.3 Da
IEP (calculated)
4.504
GRAVY (calculated)
-0.348
Length
285 amino acids
Sequence
(BLAST)
001: MRGHEGIARR LNRGGMACEA VRRSAGHCEA FCGQYAGDDG FLVYLIEQAP CLKSLRLISC NLVSNEGLTV AVKELPLLEE LELSLCPNVG GFFVSNDGVC
101: GYEVYRFVSE VCPQLKRFRL SNEDFNVTRD WNKNKDVGGI AGMHGLRSLQ LFGNGMDNEG LQTVLHCCPH LESLDIRHCF NVDMDETLLL KCARLKTLRL
201: PDDPTDDYDL EVKTPIRMCA VIDDSPWSSD GYDSYRYQLR SPEYLNDFDS DSGDDTDFFG EPSRYECDLD KYDMMLPMSM RTFLK
Best Arabidopsis Sequence Match ( AT4G03630.1 )
(BLAST)
001: MNNEDFNADE LLTFVAYRSS ILKRLGRMMC HAVALSQGGC VEINIEHFGT DSLLTYIADR SSNLRHLGLA KCDQITGMGL FTEAMKLPLL EDLELSYCLI
101: KGKNLEAIGF ACLHLKTLKL NCQGFKFPGF TYDHDALGIA KRMPELRCLQ LFGNRVSDVG LNAIFDGCPH LEHLDLRQCF NINLVGDLEK RCMERIKDLR
201: RPNDSTADYP YDTSLLDLGI
Arabidopsis Description
Putative nodulin [Source:UniProtKB/TrEMBL;Acc:Q9SY41]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.