Factsheet for Bra031582.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P
Bra036257.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	Bra003735.1-P	AT1G75950.1	12795696
AT4G05460.1	Bra008231.1-P	AT1G75950.1	12795696
AT4G05460.1	Bra015801.1-P	AT1G75950.1	12795696
AT4G05460.1	Bra000874.1-P	AT4G02570.1	12795696
AT4G05460.1	Bra036257.1-P	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06267	Canola	nucleus	98.29	98.85
AT4G05460.1	Thale cress	cytosol	55.43	64.24
Bra000817.1-P	Field mustard	plastid	32.86	63.89
Bra034230.1-P	Field mustard	cytosol	46.86	62.36
Bra034226.1-P	Field mustard	cytosol	50.86	61.81
Bra030690.1-P	Field mustard	cytosol	49.43	61.57
Bra000816.1-P	Field mustard	plastid	54.57	58.77
Bra034231.1-P	Field mustard	cytosol, plastid	42.86	57.92
Bra034228.1-P	Field mustard	cytosol	48.86	57.58
Bra034229.1-P	Field mustard	cytosol	44.57	56.52
Bra030342.1-P	Field mustard	cytosol	37.14	55.79
Bra000723.1-P	Field mustard	cytosol	23.43	53.95
Bra034227.1-P	Field mustard	plastid	48.57	53.46
KRH21099	Soybean	cytosol	43.14	48.55
VIT_10s0003g04300.t01	Wine grape	cytosol	42.57	46.42
KRH11147	Soybean	cytosol	41.14	45.28
PGSC0003DMT400016134	Potato	cytosol	36.86	44.48
PGSC0003DMT400058969	Potato	cytosol	11.14	43.82
PGSC0003DMT400052833	Potato	cytosol	33.71	42.91
Solyc08g006940.2.1	Tomato	cytosol	37.71	42.44
PGSC0003DMT400090939	Potato	cytosol	35.43	40.92
Solyc08g013800.2.1	Tomato	cytosol	32.86	39.12
Solyc08g013780.1.1	Tomato	cytosol	13.71	39.02
PGSC0003DMT400015035	Potato	cytosol	33.14	37.91
PGSC0003DMT400015030	Potato	cytosol	32.0	37.84
TraesCS7A01G304900.1	Wheat	mitochondrion, nucleus	27.71	36.33
PGSC0003DMT400054358	Potato	cytosol	34.29	35.4
TraesCS5B01G081700.1	Wheat	cytosol	16.29	34.34
Bra034194.1-P	Field mustard	cytosol	52.29	34.21
TraesCS3B01G443100.1	Wheat	cytosol	25.14	34.11
Bra020205.1-P	Field mustard	plastid	54.0	33.33
TraesCS1A01G128000.1	Wheat	cytosol	21.71	32.62
TraesCS5A01G075400.1	Wheat	cytosol	28.0	32.03
TraesCS5D01G088900.1	Wheat	cytosol	28.0	32.03
TraesCS1D01G126200.1	Wheat	nucleus	26.29	31.62
TraesCS5D01G484300.1	Wheat	cytosol	18.29	31.53
Os02t0317500-01	Rice	cytosol	29.43	31.21
TraesCS3B01G443800.1	Wheat	nucleus	30.57	31.01
Solyc08g013820.2.1	Tomato	cytosol	32.86	30.91
TraesCS5D01G100900.1	Wheat	endoplasmic reticulum	15.14	30.81
TraesCS5A01G471800.1	Wheat	cytosol	17.71	30.54
EES14679	Sorghum	nucleus	30.0	30.52
TraesCS5B01G466500.1	Wheat	extracellular	9.14	30.48
TraesCS7B01G205200.1	Wheat	mitochondrion	30.0	30.35
TraesCS7D01G300400.1	Wheat	mitochondrion, nucleus	30.0	30.35
TraesCS5B01G094800.1	Wheat	endoplasmic reticulum	14.86	30.23
TraesCS5B01G484300.1	Wheat	cytosol	17.43	30.05
Zm00001d024252_P001	Maize	cytosol	22.57	29.92
TraesCS3A01G410700.1	Wheat	mitochondrion	29.71	29.71
Os08t0194350-00	Rice	cytosol	22.57	29.7
Zm00001d010914_P001	Maize	cytosol	27.71	29.66
KXG24675	Sorghum	cytosol	24.29	29.51
TraesCS4B01G183800.1	Wheat	cytosol	25.71	29.41
Os02t0317300-01	Rice	cytosol	27.43	29.27
TraesCS1D01G034100.1	Wheat	cytosol	27.43	29.27
TraesCS5B01G484500.1	Wheat	cytosol	17.14	29.27
EES17669	Sorghum	cytosol	27.71	29.22
HORVU2Hr1G027710.1	Barley	cytosol	24.29	29.21
TraesCS5D01G468200.1	Wheat	cytosol, plasma membrane, plastid	16.86	29.21
HORVU5Hr1G020150.1	Barley	mitochondrion	28.29	29.2
TraesCS3A01G411000.1	Wheat	nucleus	28.29	29.2
TraesCS4B01G183700.1	Wheat	cytosol	24.57	29.15
TraesCS3B01G444000.1	Wheat	nucleus	29.14	29.14
TraesCS3D01G405300.1	Wheat	nucleus	29.14	29.14
KXG24670	Sorghum	cytosol	26.29	29.02
Zm00001d024265_P001	Maize	cytosol	24.86	29.0
Zm00001d046526_P001	Maize	plastid	23.43	28.98
TraesCS2A01G313400.1	Wheat	cytosol	25.71	28.94
Os08t0195800-00	Rice	cytosol, mitochondrion, nucleus	28.57	28.9
TraesCS7A01G193100.1	Wheat	cytosol	25.43	28.9
TraesCS7B01G287400.1	Wheat	cytosol	26.57	28.79
HORVU0Hr1G019800.1	Barley	cytosol	25.43	28.71
HORVU1Hr1G004970.3	Barley	cytosol	26.57	28.7
TraesCS1A01G033100.1	Wheat	cytosol	26.86	28.66
TraesCS7B01G098400.1	Wheat	cytosol	25.14	28.57
TraesCS2A01G153600.1	Wheat	cytosol, plastid	25.14	28.48
TraesCS2B01G332200.1	Wheat	cytosol	25.43	28.43
TraesCS5B01G484600.1	Wheat	cytosol	16.86	28.37
TraesCS7A01G484100.1	Wheat	cytosol	8.0	28.28
TraesCS7D01G194300.1	Wheat	cytosol	24.29	28.24
TraesCS1B01G041200.1	Wheat	cytosol	26.57	28.18
TraesCS2B01G178700.1	Wheat	plastid	24.86	28.16
TraesCS7D01G381100.1	Wheat	mitochondrion	27.43	28.15
HORVU2Hr1G027770.2	Barley	mitochondrion	24.29	28.15
TraesCS2D01G311900.1	Wheat	cytosol	25.14	28.11
TraesCS7D01G194400.1	Wheat	extracellular	25.14	27.85
TraesCS2D01G159000.1	Wheat	plastid	24.57	27.83
OQU80176	Sorghum	mitochondrion	17.43	27.35
TraesCS2D01G070200.1	Wheat	cytosol	24.86	26.85
Os11t0637300-00	Rice	cytosol	9.14	26.67
Os08t0193500-00	Rice	cytosol	16.29	26.03
TraesCS2B01G085400.1	Wheat	cytosol	23.71	25.94
TraesCS2B01G085200.1	Wheat	cytosol	24.0	25.93
TraesCS7B01G480000.1	Wheat	cytosol	23.71	25.86
TraesCS7D01G203500.1	Wheat	plastid	24.86	25.59
TraesCS2A01G071400.1	Wheat	cytosol	7.71	25.47
TraesCS2B01G385500.1	Wheat	cytosol, plasma membrane, plastid	16.29	25.45
HORVU2Hr1G020470.1	Barley	mitochondrion	8.57	25.42
Zm00001d046527_P001	Maize	extracellular, mitochondrion, nucleus	16.0	25.23
Os08t0193200-00	Rice	cytosol	8.29	25.22
TraesCS2D01G011000.1	Wheat	cytosol	22.86	25.16
TraesCS5B01G484100.1	Wheat	cytosol	16.0	25.0
TraesCS7D01G203600.1	Wheat	plastid	24.29	24.93
TraesCS3B01G452600.1	Wheat	extracellular	23.43	24.85
TraesCS7D01G555100.1	Wheat	cytosol	23.71	24.78
Os08t0193900-01	Rice	nucleus	28.0	24.75
TraesCS3D01G413100.1	Wheat	cytosol, endoplasmic reticulum, vacuole	24.57	24.71
TraesCS6B01G067700.1	Wheat	plastid	18.86	24.63
Zm00001d024764_P001	Maize	cytosol	24.86	24.37
OQU80048	Sorghum	cytosol	19.71	24.21
TraesCS5B01G284300.1	Wheat	cytosol	23.71	24.13
TraesCS5D01G292400.1	Wheat	cytosol	23.71	24.13
Os08t0191300-00	Rice	cytosol, golgi	17.43	23.74
HORVU2Hr1G020540.2	Barley	cytosol	18.86	23.49
TraesCS2A01G119000.1	Wheat	nucleus	28.86	23.38
TraesCS4D01G274100.1	Wheat	cytosol	9.43	23.24
HORVU2Hr1G077990.2	Barley	plastid	24.29	22.73
TraesCS6B01G310200.1	Wheat	plastid	23.43	22.71
TraesCS6A01G090000.1	Wheat	mitochondrion	22.86	22.66
TraesCSU01G016500.1	Wheat	mitochondrion	22.86	22.6
HORVU6Hr1G014660.1	Barley	cytosol	13.71	22.54
TraesCS6B01G112100.1	Wheat	mitochondrion	22.29	22.29
Os08t0193300-00	Rice	cytosol	21.14	22.22
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	19.14	22.11
TraesCS6B01G067500.1	Wheat	cytosol, extracellular	15.14	21.81
TraesCS5B01G484200.1	Wheat	cytosol, peroxisome, plastid	12.0	21.76
EES14677	Sorghum	cytosol, mitochondrion, nucleus, plastid	29.14	21.7
TraesCS6A01G089600.1	Wheat	cytosol, mitochondrion	21.14	21.7
TraesCS6B01G112000.1	Wheat	mitochondrion	20.86	21.16
OQU80174	Sorghum	cytosol	8.0	20.9
Os08t0195000-00	Rice	cytosol, peroxisome, plastid	14.57	20.4
TraesCSU01G016600.1	Wheat	mitochondrion	15.71	20.37
HORVU6Hr1G070700.2	Barley	mitochondrion	22.86	20.2
TraesCS3D01G413000.1	Wheat	cytosol	25.14	20.09
TraesCS6A01G051000.1	Wheat	plastid	21.14	19.89
HORVU3Hr1G092720.1	Barley	cytosol, mitochondrion, nucleus	26.86	19.83
TraesCS3B01G452400.1	Wheat	cytosol	25.14	19.78
TraesCS3D01G412900.1	Wheat	cytosol, plastid	26.29	19.66
TraesCS3B01G452300.1	Wheat	plastid	26.0	19.57
TraesCS3B01G452500.1	Wheat	cytosol	26.29	19.45
HORVU6Hr1G070690.2	Barley	extracellular, mitochondrion, plasma membrane	16.0	18.73
TraesCS3A01G417500.1	Wheat	cytosol	20.86	18.67
TraesCS3A01G417400.1	Wheat	cytosol	26.29	18.55
Os08t0195900-00	Rice	cytosol, mitochondrion, nucleus, plastid	15.71	18.21
TraesCS5D01G484100.1	Wheat	cytosol	16.0	15.09
Os08t0196200-01	Rice	cytosol	7.71	9.85
Os08t0194000-00	Rice	cytosol, vacuole	0.86	0.79

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra031582	EnsemblPlants:Bra031582.1	EnsemblPlants:Bra031582.1-P	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M4ES04	PFAM:PF12937	PANTHER:PTHR44078	PANTHER:PTHR44078:SF5	SMART:SM00256
SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI00025433DB	SEG:seg	:	:

Description

AT4G05460 (E=5e-053) | F-box family protein (FBL20)

Coordinates

chrA09:-:35717414..35719324

Molecular Weight (calculated)

39467.7 Da

IEP (calculated)

4.536

GRAVY (calculated)

-0.322

Length

350 amino acids

Sequence
(BLAST)

001: MASSSSSPSP SPTAMKEGDN YPNWTELLPE LTSSILHRLG AIEIVETARK VCRSWRRVCK DPSMWRKIDM RNLGDHGDMY YEELCRHAVD LSQGGLVEIN
101: LCHFATDSLL SYIADRFQNL MVVLKKNIHL MVGSNIVMLL RAKCVSFSSS NLRSLKVAQC YEITSEGLIE AAAKLPLLEE LEVSYCSLSE ESLKVIGKSC
201: PNLKTLKKNC VGYRRPRDES DDVALAIAET MPGLRHLQLF GDRLTDVGLN AILDGCPNLE HLDLRQCFNV ELVGDLEKRC LERVKVVRRP NDSVHDYPFD
301: ATVNDVSSSD DGDPYGLSDV DIMSEDEFYY DDLSEDASDN SDFDPYEYYY

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.