Factsheet for TraesCS3D01G405300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	TraesCS3A01G457400.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3B01G497300.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3D01G450200.1	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G444000.1	Wheat	nucleus	95.14	95.14
TraesCS3A01G410700.1	Wheat	mitochondrion	94.57	94.57
TraesCS3A01G411000.1	Wheat	nucleus	82.0	84.66
TraesCS7D01G300400.1	Wheat	mitochondrion, nucleus	70.0	70.81
EES14679	Sorghum	nucleus	63.14	64.24
TraesCS7D01G381100.1	Wheat	mitochondrion	53.14	54.55
TraesCS1D01G126200.1	Wheat	nucleus	43.71	52.58
TraesCS2D01G311900.1	Wheat	cytosol	45.71	51.12
TraesCS7D01G194300.1	Wheat	cytosol	42.86	49.83
TraesCS7D01G194400.1	Wheat	extracellular	42.0	46.52
TraesCS5D01G484300.1	Wheat	cytosol	24.29	41.87
TraesCS5D01G100900.1	Wheat	endoplasmic reticulum	20.57	41.86
TraesCS4D01G274100.1	Wheat	cytosol	16.57	40.85
TraesCS2D01G011000.1	Wheat	cytosol	36.86	40.57
TraesCS1D01G034100.1	Wheat	cytosol	37.71	40.24
TraesCS5D01G468200.1	Wheat	cytosol, plasma membrane, plastid	23.14	40.1
Bra000817.1-P	Field mustard	plastid	20.29	39.44
TraesCS2D01G070200.1	Wheat	cytosol	35.71	38.58
TraesCS5D01G088900.1	Wheat	cytosol	33.71	38.56
CDY21989	Canola	cytosol	8.86	38.27
TraesCS7D01G203600.1	Wheat	plastid	37.14	38.12
CDX99649	Canola	cytosol	25.14	37.77
CDY15937	Canola	cytosol	24.86	37.34
Bra030342.1-P	Field mustard	cytosol	24.86	37.34
AT4G03630.1	Thale cress	cytosol	23.43	37.27
CDY48580	Canola	cytosol	32.57	37.13
VIT_10s0003g04300.t01	Wine grape	cytosol	33.71	36.76
TraesCS7D01G203500.1	Wheat	plastid	35.43	36.47
AT4G05460.1	Thale cress	cytosol	31.43	36.42
TraesCS2D01G159000.1	Wheat	plastid	31.71	35.92
CDY48574	Canola	cytosol	30.57	35.91
Bra034227.1-P	Field mustard	plastid	32.57	35.85
Bra034230.1-P	Field mustard	cytosol	26.86	35.74
CDY21333	Canola	nucleus, plastid	30.0	35.71
CDX73787	Canola	cytosol	26.0	35.55
Bra034229.1-P	Field mustard	cytosol	28.0	35.51
CDY48576	Canola	cytosol	30.0	35.35
CDY48575	Canola	plastid	32.0	35.33
CDY21988	Canola	cytosol	15.14	35.1
Bra034226.1-P	Field mustard	cytosol	28.86	35.07
CDY48578	Canola	cytosol	25.14	35.06
Bra034228.1-P	Field mustard	cytosol	29.71	35.02
CDY59275	Canola	plastid	31.43	34.27
AT4G05490.1	Thale cress	plastid	30.0	34.2
Bra034231.1-P	Field mustard	cytosol, plastid	25.14	33.98
CDX90789	Canola	cytosol	29.14	33.89
Bra000816.1-P	Field mustard	plastid	31.43	33.85
AT4G05497.1	Thale cress	plastid	23.71	33.74
CDY21986	Canola	cytosol, plastid	28.86	33.67
CDY15618	Canola	cytosol	26.86	33.45
Bra030690.1-P	Field mustard	cytosol	26.86	33.45
KRH21099	Soybean	cytosol	29.71	33.44
CDY48577	Canola	cytosol	26.86	33.33
CDX77948	Canola	cytosol	16.0	33.14
CDY62000	Canola	plastid	30.86	32.83
CDX86473	Canola	cytosol	23.71	32.42
PGSC0003DMT400016134	Potato	cytosol	26.57	32.07
CDY10283	Canola	cytosol	28.29	31.53
PGSC0003DMT400058969	Potato	cytosol	8.0	31.46
KRH11147	Soybean	cytosol	28.57	31.45
AT4G05470.1	Thale cress	cytosol, plastid	27.43	31.37
TraesCS7D01G555100.1	Wheat	cytosol	30.0	31.34
PGSC0003DMT400052833	Potato	cytosol	24.57	31.27
CDY09910	Canola	nucleus	28.57	31.25
TraesCS5D01G292400.1	Wheat	cytosol	30.57	31.1
AT4G05475.1	Thale cress	cytosol	27.43	31.07
Solyc08g013780.1.1	Tomato	cytosol	10.86	30.89
Solyc08g013800.2.1	Tomato	cytosol	25.71	30.61
TraesCS3D01G413100.1	Wheat	cytosol, endoplasmic reticulum, vacuole	30.29	30.46
Bra000723.1-P	Field mustard	cytosol	13.14	30.26
Solyc08g006940.2.1	Tomato	cytosol	26.86	30.23
PGSC0003DMT400090939	Potato	cytosol	26.0	30.03
CDY06267	Canola	nucleus	29.43	29.6
Bra031582.1-P	Field mustard	nucleus	29.14	29.14
AT5G52480.1	Thale cress	cytosol	20.0	29.05
PGSC0003DMT400015035	Potato	cytosol	25.14	28.76
PGSC0003DMT400015030	Potato	cytosol	22.0	26.01
PGSC0003DMT400054358	Potato	cytosol	25.14	25.96
CDY21990	Canola	cytosol	14.0	25.52
CDY21983	Canola	cytosol	20.29	25.09
TraesCS3D01G413000.1	Wheat	cytosol	30.29	24.2
TraesCS3D01G412900.1	Wheat	cytosol, plastid	32.29	24.15
Solyc08g013820.2.1	Tomato	cytosol	24.86	23.39
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	19.43	22.44
TraesCS5D01G484100.1	Wheat	cytosol	21.71	20.49
CDY09154	Canola	plastid	31.43	19.4
Bra020205.1-P	Field mustard	plastid	31.43	19.4
Bra034194.1-P	Field mustard	cytosol	29.43	19.25
CDY22112	Canola	cytosol	24.29	17.63

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF12937	PFAM:PF13516	PFscan:PS50181	PANTHER:PTHR44078
PANTHER:PTHR44078:SF3	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS3D01G405300	EnsemblPlants:TraesCS3D01G405300.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:519682049..519684674

Molecular Weight (calculated)

39509.5 Da

IEP (calculated)

4.683

GRAVY (calculated)

-0.437

Length

350 amino acids

Sequence
(BLAST)

001: MPSSSSSRRR RGGRRGRRGR NAPTAPAAAD ETETRNWAEL PLDAISAVLH KLDHVDILMG AGQVCRSWRG AARDEPELWR RINILGHADL EHELNFPGMA
101: QAAVRRSAGR CEAFWGEYTA DHDFLLYLAD QAPSLKSLRL ISCYDVFDDG LTEAIMKFPL LEELELSLCP NVDDSGVFGV IGKACPQLKR FRLSKNVFFD
201: YEAGDQEKDE EAMGIATMHE LRSLQLFSNS LTNKGLTAIL DNCHHLESLD IRHCFNVTMD DALRAKCARI STLRLPNDST DDYDFIVKSP IWRNSESFLG
301: DYVGSDSDYE LGSDDYDDYC DPSRYLDGVY EDELNDEARM ILRGMCMLIK

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.