Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 85.55 | 82.86 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 85.25 | 82.57 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 84.66 | 82.0 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 59.59 | 75.66 |
| EES14679 | Sorghum | nucleus | 62.83 | 61.92 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 46.02 | 50.16 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 59.59 | 46.76 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 41.3 | 45.45 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 30.09 | 43.78 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 12.68 | 40.57 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 11.5 | 39.39 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 37.46 | 38.72 |
| CDX99649 | Canola | cytosol | 25.96 | 37.77 |
| Bra030342.1-P | Field mustard | cytosol | 25.66 | 37.34 |
| CDY15937 | Canola | cytosol | 25.66 | 37.34 |
| Bra000817.1-P | Field mustard | plastid | 19.76 | 37.22 |
| CDY21989 | Canola | cytosol | 8.85 | 37.04 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 33.04 | 36.6 |
| CDY48580 | Canola | cytosol | 33.04 | 36.48 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 21.83 | 36.45 |
| AT4G03630.1 | Thale cress | cytosol | 23.6 | 36.36 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 32.74 | 35.92 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 33.92 | 35.83 |
| CDY48576 | Canola | cytosol | 30.97 | 35.35 |
| Bra034227.1-P | Field mustard | plastid | 32.74 | 34.91 |
| CDY48575 | Canola | plastid | 32.45 | 34.7 |
| Bra034228.1-P | Field mustard | cytosol | 30.38 | 34.68 |
| AT4G05460.1 | Thale cress | cytosol | 30.68 | 34.44 |
| CDY48574 | Canola | cytosol | 30.09 | 34.23 |
| CDX73787 | Canola | cytosol | 25.66 | 33.98 |
| CDY48578 | Canola | cytosol | 25.07 | 33.86 |
| Bra034230.1-P | Field mustard | cytosol | 26.25 | 33.84 |
| Bra034226.1-P | Field mustard | cytosol | 28.61 | 33.68 |
| CDY21333 | Canola | nucleus, plastid | 29.2 | 33.67 |
| CDY21986 | Canola | cytosol, plastid | 29.79 | 33.67 |
| CDY59275 | Canola | plastid | 31.86 | 33.64 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 25.66 | 33.59 |
| Bra034229.1-P | Field mustard | cytosol | 27.14 | 33.33 |
| AT4G05490.1 | Thale cress | plastid | 29.79 | 32.9 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 33.04 | 32.84 |
| Bra000816.1-P | Field mustard | plastid | 31.27 | 32.62 |
| PGSC0003DMT400058969 | Potato | cytosol | 8.55 | 32.58 |
| KRH21099 | Soybean | cytosol | 29.79 | 32.48 |
| CDY21988 | Canola | cytosol | 14.45 | 32.45 |
| Bra030690.1-P | Field mustard | cytosol | 26.84 | 32.38 |
| CDY15618 | Canola | cytosol | 26.84 | 32.38 |
| CDX90789 | Canola | cytosol | 28.61 | 32.23 |
| CDX77948 | Canola | cytosol | 15.93 | 31.95 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 33.04 | 31.73 |
| AT4G05497.1 | Thale cress | plastid | 23.01 | 31.71 |
| CDX86473 | Canola | cytosol | 23.89 | 31.64 |
| CDY62000 | Canola | plastid | 30.68 | 31.61 |
| CDY48577 | Canola | cytosol | 26.25 | 31.56 |
| PGSC0003DMT400016134 | Potato | cytosol | 26.55 | 31.03 |
| Solyc08g013780.1.1 | Tomato | cytosol | 11.21 | 30.89 |
| CDY10283 | Canola | cytosol | 28.61 | 30.89 |
| KRH11147 | Soybean | cytosol | 28.61 | 30.5 |
| AT4G05475.1 | Thale cress | cytosol | 27.73 | 30.42 |
| CDY09910 | Canola | nucleus | 28.61 | 30.31 |
| Solyc08g013800.2.1 | Tomato | cytosol | 26.25 | 30.27 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 27.14 | 30.07 |
| TraesCS6A01G051000.1 | Wheat | plastid | 32.74 | 29.84 |
| PGSC0003DMT400052833 | Potato | cytosol | 24.19 | 29.82 |
| Bra000723.1-P | Field mustard | cytosol | 13.27 | 29.61 |
| CDY06267 | Canola | nucleus | 29.5 | 28.74 |
| PGSC0003DMT400090939 | Potato | cytosol | 25.66 | 28.71 |
| Solyc08g006940.2.1 | Tomato | cytosol | 26.25 | 28.62 |
| Bra031582.1-P | Field mustard | nucleus | 29.2 | 28.29 |
| PGSC0003DMT400015035 | Potato | cytosol | 25.37 | 28.1 |
| AT5G52480.1 | Thale cress | cytosol | 19.76 | 27.8 |
| PGSC0003DMT400054358 | Potato | cytosol | 25.66 | 25.66 |
| CDY21983 | Canola | cytosol | 21.24 | 25.44 |
| PGSC0003DMT400015030 | Potato | cytosol | 21.83 | 25.0 |
| CDY21990 | Canola | cytosol | 13.57 | 23.96 |
| Solyc08g013820.2.1 | Tomato | cytosol | 24.78 | 22.58 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 24.19 | 20.97 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 30.68 | 20.97 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 17.99 | 20.13 |
| Bra020205.1-P | Field mustard | plastid | 31.86 | 19.05 |
| CDY09154 | Canola | plastid | 31.86 | 19.05 |
| Bra034194.1-P | Field mustard | cytosol | 29.5 | 18.69 |
| CDY22112 | Canola | cytosol | 25.07 | 17.63 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G411000.1 | EnsemblPlantsGene:TraesCS3A01G411000 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF2 | PFAM:PF12937 | PFscan:PS50181 | SEG:seg |
| SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr3A:+:655083097..655086351
Molecular Weight (calculated)
38398.6 Da
IEP (calculated)
4.848
GRAVY (calculated)
-0.371
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSSSSSRRR RGRSGGRHAA DETETRNWAE LPLDAILTIL HKLDHVDILM GPGQVCRSWR GAARDEPELW RRINMLGHAD LENEVNLHGM AQAAVRRSAG
101: RCEAFWGEYA RDHDFLFYLA DQAPSLKSLR LISCYDRLTE AIMKFHLLEE LELSLCPNVN DSGVFGVIGK ACPQLKRFRL SKDVFCDFEA SVYGKDEEAL
201: GIATMHELRS LQLFGNILTN KGLTAILDNC RHVESLDIRH CFNVTMDDAL RAKCARISTL MLPNDSADDY DLVVKSPIRA DSESFLHDYM GSCSDYELGS
301: EDYGDYCDLS RYLDGVYEDE DELDEEGKMI LGGMRMFMK
101: RCEAFWGEYA RDHDFLFYLA DQAPSLKSLR LISCYDRLTE AIMKFHLLEE LELSLCPNVN DSGVFGVIGK ACPQLKRFRL SKDVFCDFEA SVYGKDEEAL
201: GIATMHELRS LQLFGNILTN KGLTAILDNC RHVESLDIRH CFNVTMDDAL RAKCARISTL MLPNDSADDY DLVVKSPIRA DSESFLHDYM GSCSDYELGS
301: EDYGDYCDLS RYLDGVYEDE DELDEEGKMI LGGMRMFMK
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.