Factsheet for TraesCS6A01G089600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	TraesCS3A01G457400.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3B01G497300.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3D01G450200.1	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G016600.1	Wheat	mitochondrion	64.81	81.85
TraesCS6B01G112000.1	Wheat	mitochondrion	80.94	80.0
TraesCS6A01G090000.1	Wheat	mitochondrion	54.55	52.69
TraesCS6A01G051000.1	Wheat	plastid	56.6	51.88
TraesCS7D01G203600.1	Wheat	plastid	43.11	43.11
TraesCS7D01G203500.1	Wheat	plastid	40.76	40.88
TraesCS7A01G304900.1	Wheat	mitochondrion, nucleus	30.79	39.33
TraesCS7A01G484100.1	Wheat	cytosol	9.68	33.33
TraesCS3A01G410700.1	Wheat	mitochondrion	34.02	33.14
TraesCS7A01G193100.1	Wheat	cytosol	29.91	33.12
TraesCS3A01G411000.1	Wheat	nucleus	32.84	33.04
TraesCS2A01G071400.1	Wheat	cytosol	9.97	32.08
CDY21988	Canola	cytosol	14.08	31.79
TraesCS2A01G313400.1	Wheat	cytosol	28.74	31.51
TraesCS5A01G471800.1	Wheat	cytosol	18.48	31.03
TraesCS1A01G033100.1	Wheat	cytosol	29.03	30.18
CDY15937	Canola	cytosol	19.65	28.76
Bra034230.1-P	Field mustard	cytosol	21.99	28.52
CDY21989	Canola	cytosol	6.74	28.4
Bra000817.1-P	Field mustard	plastid	14.96	28.33
Bra030342.1-P	Field mustard	cytosol	19.35	28.33
TraesCS5A01G075400.1	Wheat	cytosol	25.22	28.1
Zm00001d046527_P001	Maize	extracellular, mitochondrion, nucleus	18.18	27.93
CDX99649	Canola	cytosol	19.06	27.9
CDY21333	Canola	nucleus, plastid	24.05	27.89
CDY48580	Canola	cytosol	24.93	27.69
Zm00001d046526_P001	Maize	plastid	22.87	27.56
AT4G05460.1	Thale cress	cytosol	24.34	27.48
Bra030690.1-P	Field mustard	cytosol	22.58	27.4
CDY15618	Canola	cytosol	22.58	27.4
CDX86473	Canola	cytosol	20.53	27.34
CDY48578	Canola	cytosol	19.94	27.09
Bra034228.1-P	Field mustard	cytosol	23.46	26.94
CDY48576	Canola	cytosol	23.17	26.6
TraesCS2A01G153600.1	Wheat	cytosol, plastid	24.05	26.54
Bra034229.1-P	Field mustard	cytosol	21.41	26.45
Bra034227.1-P	Field mustard	plastid	24.63	26.42
TraesCS2A01G119000.1	Wheat	nucleus	33.14	26.16
CDY48577	Canola	cytosol	21.41	25.89
PGSC0003DMT400015035	Potato	cytosol	23.17	25.82
TraesCS1A01G128000.1	Wheat	cytosol	17.6	25.75
AT4G05497.1	Thale cress	plastid	18.48	25.61
CDY48575	Canola	plastid	23.75	25.55
AT4G03630.1	Thale cress	cytosol	16.42	25.45
CDY21986	Canola	cytosol, plastid	22.29	25.33
CDX90789	Canola	cytosol	22.29	25.25
VIT_10s0003g04300.t01	Wine grape	cytosol	23.75	25.23
Solyc08g013800.2.1	Tomato	cytosol	21.7	25.17
CDY48574	Canola	cytosol	21.99	25.17
Bra034231.1-P	Field mustard	cytosol, plastid	19.06	25.1
KRH21099	Soybean	cytosol	22.87	25.08
CDX73787	Canola	cytosol	18.77	25.0
CDX77948	Canola	cytosol	12.32	24.85
Bra034226.1-P	Field mustard	cytosol	20.82	24.65
KRH11147	Soybean	cytosol	22.87	24.53
AT5G52480.1	Thale cress	cytosol	17.3	24.48
Solyc08g006940.2.1	Tomato	cytosol	22.29	24.44
CDY59275	Canola	plastid	22.87	24.3
AT4G05490.1	Thale cress	plastid	21.7	24.1
PGSC0003DMT400090939	Potato	cytosol	21.11	23.76
CDY09910	Canola	nucleus	22.29	23.75
Bra000816.1-P	Field mustard	plastid	22.58	23.69
CDY62000	Canola	plastid	22.58	23.4
PGSC0003DMT400015030	Potato	cytosol	20.23	23.31
AT4G05470.1	Thale cress	cytosol, plastid	20.82	23.2
AT4G05475.1	Thale cress	cytosol	20.53	22.65
CDY10283	Canola	cytosol	20.82	22.61
PGSC0003DMT400016134	Potato	cytosol	18.77	22.07
PGSC0003DMT400052833	Potato	cytosol	17.6	21.82
CDY06267	Canola	nucleus	21.99	21.55
Bra031582.1-P	Field mustard	nucleus	21.7	21.14
Bra000723.1-P	Field mustard	cytosol	9.38	21.05
Solyc08g013820.2.1	Tomato	cytosol	22.58	20.7
PGSC0003DMT400054358	Potato	cytosol	20.23	20.35
Solyc08g013780.1.1	Tomato	cytosol	7.33	20.33
CDY21990	Canola	cytosol	11.44	20.31
PGSC0003DMT400058969	Potato	cytosol	4.4	16.85
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	14.96	16.83
CDY21983	Canola	cytosol	13.78	16.61
TraesCS3A01G417400.1	Wheat	cytosol	22.87	15.73
TraesCS3A01G417500.1	Wheat	cytosol	17.6	15.35
Bra034194.1-P	Field mustard	cytosol	21.99	14.02
Bra020205.1-P	Field mustard	plastid	23.17	13.93
CDY09154	Canola	plastid	23.17	13.93
CDY22112	Canola	cytosol	18.18	12.86

Protein Annotations

EnsemblPlants:TraesCS6A01G089600.1	EnsemblPlantsGene:TraesCS6A01G089600	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR44078	PANTHER:PTHR44078:SF3	PFAM:PF12937	SUPFAM:SSF52047	SUPFAM:SSF81383	MapMan:35.1

Description

No Description!

Coordinates

chr6A:-:57763535..57764843

Molecular Weight (calculated)

39488.6 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.421

Length

341 amino acids

Sequence
(BLAST)

001: MPPLPRASQR IRYSKKKGAP PERDWAELRP DLISLILHRL DQAELLVGGV AGVCRSWRRA AREQPELWPR VDLREGLWYV PPFRPKISIE SMVRKALRLG
101: AGQTEAFLSD GVDNHTLLLL AQRAPSLKSL HLITCSVSNL GFAKAIKMLP LLEELEISRP TYCNTREMVE LVAGICLELK HFRLVMHGLE GRRTSARVAS
201: LVARMHKLRS LHLVRLKLDN EELGTILDNC HDLEYLDMRE CSLVDMDNMD DSPRVKLAQI NMDNHEYSSD QQVDYEYKIR SIHYELNYRE LRDGSLSYYP
301: DYNDSYEEYC YYIGSGDGID DADLEQYEKI LDVKIMRRYL S

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.