Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G452300.1 | Wheat | plastid | 80.24 | 85.59 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 80.65 | 85.47 |
| Os08t0193200-00 | Rice | cytosol | 16.53 | 71.3 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 47.98 | 60.87 |
| KXG24670 | Sorghum | cytosol | 37.9 | 59.31 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 10.89 | 54.55 |
| Os08t0193500-00 | Rice | cytosol | 23.79 | 53.88 |
| Os08t0193300-00 | Rice | cytosol | 28.43 | 42.34 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 17.14 | 41.87 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 8.67 | 40.57 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 19.56 | 36.33 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 22.58 | 36.25 |
| PGSC0003DMT400058969 | Potato | cytosol | 6.45 | 35.96 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 20.97 | 33.99 |
| Bra034230.1-P | Field mustard | cytosol | 17.54 | 33.08 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 23.19 | 32.86 |
| CDY48578 | Canola | cytosol | 16.53 | 32.67 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 20.16 | 32.47 |
| KRH21099 | Soybean | cytosol | 20.16 | 32.15 |
| CDY21989 | Canola | cytosol | 5.24 | 32.1 |
| CDX73787 | Canola | cytosol | 16.53 | 32.03 |
| CDY21988 | Canola | cytosol | 9.68 | 31.79 |
| AT4G05460.1 | Thale cress | cytosol | 19.35 | 31.79 |
| Bra000817.1-P | Field mustard | plastid | 11.49 | 31.67 |
| CDX99649 | Canola | cytosol | 14.72 | 31.33 |
| CDY48580 | Canola | cytosol | 19.15 | 30.94 |
| Bra030342.1-P | Field mustard | cytosol | 14.52 | 30.9 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 16.13 | 30.89 |
| KRH11147 | Soybean | cytosol | 19.76 | 30.82 |
| Bra034229.1-P | Field mustard | cytosol | 17.14 | 30.8 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 20.36 | 30.79 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 20.97 | 30.68 |
| CDY15937 | Canola | cytosol | 14.31 | 30.47 |
| CDY48576 | Canola | cytosol | 18.15 | 30.3 |
| Bra034227.1-P | Field mustard | plastid | 19.35 | 30.19 |
| PGSC0003DMT400016134 | Potato | cytosol | 17.54 | 30.0 |
| AT4G03630.1 | Thale cress | cytosol | 13.31 | 30.0 |
| CDY21986 | Canola | cytosol, plastid | 18.15 | 30.0 |
| CDY48575 | Canola | plastid | 19.15 | 29.97 |
| CDY21333 | Canola | nucleus, plastid | 17.74 | 29.93 |
| AT5G52480.1 | Thale cress | cytosol | 14.52 | 29.88 |
| CDY48574 | Canola | cytosol | 17.94 | 29.87 |
| CDX86473 | Canola | cytosol | 15.32 | 29.69 |
| AT4G05497.1 | Thale cress | plastid | 14.72 | 29.67 |
| Bra034228.1-P | Field mustard | cytosol | 17.74 | 29.63 |
| CDX90789 | Canola | cytosol | 17.94 | 29.57 |
| Bra030690.1-P | Field mustard | cytosol | 16.73 | 29.54 |
| CDY15618 | Canola | cytosol | 16.73 | 29.54 |
| Bra034226.1-P | Field mustard | cytosol | 17.14 | 29.51 |
| PGSC0003DMT400052833 | Potato | cytosol | 16.33 | 29.45 |
| AT4G05490.1 | Thale cress | plastid | 18.15 | 29.32 |
| Bra000816.1-P | Field mustard | plastid | 19.15 | 29.23 |
| CDX77948 | Canola | cytosol | 9.88 | 28.99 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 18.15 | 28.94 |
| CDY48577 | Canola | cytosol | 16.13 | 28.37 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 18.35 | 28.35 |
| CDY62000 | Canola | plastid | 18.55 | 27.96 |
| AT4G05475.1 | Thale cress | cytosol | 17.34 | 27.83 |
| PGSC0003DMT400090939 | Potato | cytosol | 16.94 | 27.72 |
| Solyc08g006940.2.1 | Tomato | cytosol | 17.34 | 27.65 |
| CDY09910 | Canola | nucleus | 17.74 | 27.5 |
| PGSC0003DMT400015035 | Potato | cytosol | 16.73 | 27.12 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 16.73 | 27.12 |
| CDY10283 | Canola | cytosol | 17.14 | 27.07 |
| Solyc08g013800.2.1 | Tomato | cytosol | 15.93 | 26.87 |
| CDY59275 | Canola | plastid | 17.34 | 26.79 |
| CDY06267 | Canola | nucleus | 18.75 | 26.72 |
| Bra000723.1-P | Field mustard | cytosol | 8.06 | 26.32 |
| Bra031582.1-P | Field mustard | nucleus | 18.55 | 26.29 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 12.3 | 26.18 |
| PGSC0003DMT400015030 | Potato | cytosol | 15.12 | 25.34 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 21.57 | 24.77 |
| Solyc08g013780.1.1 | Tomato | cytosol | 6.05 | 24.39 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 16.33 | 22.95 |
| CDY21990 | Canola | cytosol | 8.87 | 22.92 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 15.73 | 22.87 |
| Solyc08g013820.2.1 | Tomato | cytosol | 16.94 | 22.58 |
| PGSC0003DMT400054358 | Potato | cytosol | 15.32 | 22.42 |
| TraesCS6A01G051000.1 | Wheat | plastid | 16.53 | 22.04 |
| CDY21983 | Canola | cytosol | 10.89 | 19.08 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 10.89 | 17.82 |
| Bra034194.1-P | Field mustard | cytosol | 17.74 | 16.45 |
| CDY22112 | Canola | cytosol | 15.93 | 16.39 |
| CDY09154 | Canola | plastid | 17.34 | 15.17 |
| Bra020205.1-P | Field mustard | plastid | 17.34 | 15.17 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G417400.1 | EnsemblPlantsGene:TraesCS3A01G417400 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| ncoils:Coil | PANTHER:PTHR44078 | PFAM:PF12937 | SEG:seg | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:659621932..659624729
Molecular Weight (calculated)
56711.5 Da
IEP (calculated)
4.658
GRAVY (calculated)
-0.400
Length
496 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIGRSSGHH NWRSAIRSSD RGTRVLTMRK AIPPNGEIDE EAVQELVPFH PPAALRSLFG LNGLCPLVSA ADASVLCRAR SDRCKRAKRE AVAGDDLLPE
101: MAKQGFQAYP HKNRVDLPGT MEAGPNPLPV SDFRDWSELP LDALSAIFMK LGTIEILMGA GLVCRSWLVA AKSPELWRFV DMTRHKLVFS KEGNIMCQMA
201: KVAIDRSDGR MESFWAQKFV SSELLNYIAS RRVSYSLLVI LIKDQGYKMQ LIEEHWLIGA YYFWDDEDVV IKLAAKCPML EEIEYSGQKL TWDFFKGIGA
301: ACPALKRLRV CLPWYDSDSI EREIRMEQRQ NDEEEEEEEE PYEAWETRHN EEAFAIAESL HELRLLQMAG YGLTKKGVYA ILEGCPHLEF LDLRECGHLL
401: VDAELKARCV NIKHVRLPGA WPHAHCPELD TIEEDEGEVI EMPNLYEIET QDLHNEAAMD NDDYGENYWD DYSLPSSPDS PVPTYSMDDP RYYWEL
101: MAKQGFQAYP HKNRVDLPGT MEAGPNPLPV SDFRDWSELP LDALSAIFMK LGTIEILMGA GLVCRSWLVA AKSPELWRFV DMTRHKLVFS KEGNIMCQMA
201: KVAIDRSDGR MESFWAQKFV SSELLNYIAS RRVSYSLLVI LIKDQGYKMQ LIEEHWLIGA YYFWDDEDVV IKLAAKCPML EEIEYSGQKL TWDFFKGIGA
301: ACPALKRLRV CLPWYDSDSI EREIRMEQRQ NDEEEEEEEE PYEAWETRHN EEAFAIAESL HELRLLQMAG YGLTKKGVYA ILEGCPHLEF LDLRECGHLL
401: VDAELKARCV NIKHVRLPGA WPHAHCPELD TIEEDEGEVI EMPNLYEIET QDLHNEAAMD NDDYGENYWD DYSLPSSPDS PVPTYSMDDP RYYWEL
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.