Factsheet for Solyc08g013780.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g099290.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	Solyc01g099290.2.1	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21989	Canola	cytosol	26.83	40.74
Bra000723.1-P	Field mustard	cytosol	34.96	28.29
Solyc08g013800.2.1	Tomato	cytosol	64.23	26.87
Bra000817.1-P	Field mustard	plastid	37.4	25.56
PGSC0003DMT400015030	Potato	cytosol	59.35	24.66
AT4G03630.1	Thale cress	cytosol	39.84	22.27
AT5G52480.1	Thale cress	cytosol	40.65	20.75
Solyc08g013820.2.1	Tomato	cytosol	55.28	18.28
CDY48578	Canola	cytosol	35.77	17.53
VIT_10s0003g04300.t01	Wine grape	cytosol	45.53	17.45
KRH21099	Soybean	cytosol	43.9	17.36
CDY21983	Canola	cytosol	39.84	17.31
CDX73787	Canola	cytosol	35.77	17.19
Solyc08g006940.2.1	Tomato	cytosol	43.09	17.04
CDY48575	Canola	plastid	43.09	16.72
Bra034226.1-P	Field mustard	cytosol	39.02	16.67
Bra034227.1-P	Field mustard	plastid	43.09	16.67
KRH11147	Soybean	cytosol	43.09	16.67
CDX86473	Canola	cytosol	34.15	16.41
Bra034230.1-P	Field mustard	cytosol	34.96	16.35
AT4G05490.1	Thale cress	plastid	40.65	16.29
CDX90789	Canola	cytosol	39.84	16.28
AT4G05475.1	Thale cress	cytosol	40.65	16.18
AT4G05470.1	Thale cress	cytosol, plastid	39.84	16.01
CDY48580	Canola	cytosol	39.84	15.96
CDX99649	Canola	cytosol	30.08	15.88
CDY21333	Canola	nucleus, plastid	37.4	15.65
Bra030690.1-P	Field mustard	cytosol	34.96	15.3
CDY15618	Canola	cytosol	34.96	15.3
Bra034228.1-P	Field mustard	cytosol	36.59	15.15
CDY48576	Canola	cytosol	36.59	15.15
Bra034231.1-P	Field mustard	cytosol, plastid	31.71	15.06
Bra030342.1-P	Field mustard	cytosol	28.46	15.02
CDY15937	Canola	cytosol	28.46	15.02
CDY09910	Canola	nucleus	39.02	15.0
TraesCS4B01G183700.1	Wheat	cytosol	35.77	14.92
Bra034229.1-P	Field mustard	cytosol	33.33	14.86
OQU80176	Sorghum	mitochondrion	26.83	14.8
Bra000816.1-P	Field mustard	plastid	39.02	14.77
TraesCS1A01G128000.1	Wheat	cytosol	27.64	14.59
CDY48574	Canola	cytosol	34.96	14.43
TraesCS5D01G088900.1	Wheat	cytosol	35.77	14.38
CDY21986	Canola	cytosol, plastid	34.96	14.33
Os02t0317300-01	Rice	cytosol	38.21	14.33
AT4G05460.1	Thale cress	cytosol	34.96	14.24
TraesCS5A01G075400.1	Wheat	cytosol	34.96	14.05
TraesCS3B01G443100.1	Wheat	cytosol	29.27	13.95
HORVU1Hr1G004970.3	Barley	cytosol	36.59	13.89
EES17669	Sorghum	cytosol	37.4	13.86
AT4G05497.1	Thale cress	plastid	27.64	13.82
Zm00001d010914_P001	Maize	cytosol	36.59	13.76
TraesCS1A01G033100.1	Wheat	cytosol	36.59	13.72
Bra031582.1-P	Field mustard	nucleus	39.02	13.71
CDY10283	Canola	cytosol	34.96	13.69
TraesCS7A01G193100.1	Wheat	cytosol	34.15	13.64
CDY06267	Canola	nucleus	38.21	13.51
CDY48577	Canola	cytosol	30.89	13.48
TraesCS1D01G034100.1	Wheat	cytosol	35.77	13.41
TraesCS4B01G183800.1	Wheat	cytosol	33.33	13.4
CDY59275	Canola	plastid	34.96	13.4
CDY62000	Canola	plastid	35.77	13.37
TraesCS7B01G098400.1	Wheat	cytosol	33.33	13.31
TraesCS1B01G041200.1	Wheat	cytosol	34.96	13.03
HORVU5Hr1G020150.1	Barley	mitochondrion	35.77	12.98
HORVU0Hr1G019800.1	Barley	cytosol	32.52	12.9
TraesCS7D01G194300.1	Wheat	cytosol	30.89	12.62
Os02t0317500-01	Rice	cytosol	33.33	12.42
TraesCS1D01G126200.1	Wheat	nucleus	29.27	12.37
TraesCS7A01G304900.1	Wheat	mitochondrion, nucleus	26.83	12.36
TraesCS2D01G070200.1	Wheat	cytosol	32.52	12.35
TraesCS7D01G194400.1	Wheat	extracellular	31.71	12.34
TraesCS2A01G313400.1	Wheat	cytosol	30.89	12.22
TraesCS2B01G085400.1	Wheat	cytosol	31.71	12.19
Zm00001d046527_P001	Maize	extracellular, mitochondrion, nucleus	21.95	12.16
KXG24675	Sorghum	cytosol	28.46	12.15
TraesCS2B01G332200.1	Wheat	cytosol	30.89	12.14
TraesCS2D01G311900.1	Wheat	cytosol	30.89	12.14
TraesCS7B01G287400.1	Wheat	cytosol	31.71	12.07
TraesCS2B01G085200.1	Wheat	cytosol	31.71	12.04
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	29.27	11.88
HORVU2Hr1G020540.2	Barley	cytosol	26.83	11.74
Zm00001d024252_P001	Maize	cytosol	25.2	11.74
Os08t0195800-00	Rice	cytosol, mitochondrion, nucleus	32.52	11.56
Zm00001d024764_P001	Maize	cytosol	33.33	11.48
TraesCS7D01G381100.1	Wheat	mitochondrion	31.71	11.44
EES14679	Sorghum	nucleus	31.71	11.34
Zm00001d024265_P001	Maize	cytosol	27.64	11.33
HORVU6Hr1G014660.1	Barley	cytosol	19.51	11.27
OQU80048	Sorghum	cytosol	26.02	11.23
TraesCS3A01G411000.1	Wheat	nucleus	30.89	11.21
TraesCS3A01G410700.1	Wheat	mitochondrion	31.71	11.14
TraesCS3B01G443800.1	Wheat	nucleus	30.89	11.01
HORVU2Hr1G027710.1	Barley	cytosol	26.02	11.0
TraesCS7B01G480000.1	Wheat	cytosol	28.46	10.9
TraesCS3B01G444000.1	Wheat	nucleus	30.89	10.86
TraesCS3D01G405300.1	Wheat	nucleus	30.89	10.86
TraesCS7D01G300400.1	Wheat	mitochondrion, nucleus	30.08	10.69
HORVU2Hr1G027770.2	Barley	mitochondrion	26.02	10.6
Os08t0194350-00	Rice	cytosol	22.76	10.53
TraesCS7D01G555100.1	Wheat	cytosol	28.46	10.45
KXG24670	Sorghum	cytosol	26.83	10.41
TraesCS7B01G205200.1	Wheat	mitochondrion	29.27	10.4
HORVU6Hr1G070690.2	Barley	extracellular, mitochondrion, plasma membrane	25.2	10.37
TraesCS3B01G452600.1	Wheat	extracellular	27.64	10.3
TraesCS2A01G153600.1	Wheat	cytosol, plastid	25.2	10.03
TraesCS2D01G159000.1	Wheat	plastid	25.2	10.03
Zm00001d046526_P001	Maize	plastid	22.76	9.89
TraesCS5D01G100900.1	Wheat	endoplasmic reticulum	13.82	9.88
TraesCS3D01G413100.1	Wheat	cytosol, endoplasmic reticulum, vacuole	27.64	9.77
TraesCS2D01G011000.1	Wheat	cytosol	25.2	9.75
TraesCS2B01G178700.1	Wheat	plastid	24.39	9.71
TraesCS7D01G203500.1	Wheat	plastid	26.83	9.71
HORVU2Hr1G077990.2	Barley	plastid	29.27	9.63
Os08t0193900-01	Rice	nucleus	30.89	9.6
TraesCS7D01G203600.1	Wheat	plastid	26.02	9.38
Os08t0191300-00	Rice	cytosol, golgi	19.51	9.34
Os08t0193300-00	Rice	cytosol	25.2	9.31
TraesCS5B01G094800.1	Wheat	endoplasmic reticulum	13.01	9.3
TraesCS6B01G310200.1	Wheat	plastid	26.02	8.86
TraesCS6B01G067500.1	Wheat	cytosol, extracellular	17.07	8.64
EES14677	Sorghum	cytosol, mitochondrion, nucleus, plastid	32.52	8.51
Bra034194.1-P	Field mustard	cytosol	36.59	8.41
TraesCS5D01G484300.1	Wheat	cytosol	13.82	8.37
HORVU6Hr1G070700.2	Barley	mitochondrion	26.83	8.33
TraesCS2A01G119000.1	Wheat	nucleus	29.27	8.33
TraesCS6A01G090000.1	Wheat	mitochondrion	23.58	8.22
TraesCS5B01G284300.1	Wheat	cytosol	22.76	8.14
TraesCS6B01G112100.1	Wheat	mitochondrion	22.76	8.0
Bra020205.1-P	Field mustard	plastid	36.59	7.94
CDY09154	Canola	plastid	36.59	7.94
TraesCSU01G016500.1	Wheat	mitochondrion	22.76	7.91
TraesCS5A01G471800.1	Wheat	cytosol	13.01	7.88
TraesCS5D01G292400.1	Wheat	cytosol	21.95	7.85
TraesCSU01G016600.1	Wheat	mitochondrion	17.07	7.78
TraesCS6B01G112000.1	Wheat	mitochondrion	21.14	7.54
TraesCS5B01G484300.1	Wheat	cytosol	12.2	7.39
TraesCS6A01G089600.1	Wheat	cytosol, mitochondrion	20.33	7.33
TraesCS5B01G484500.1	Wheat	cytosol	12.2	7.32
TraesCS5B01G484600.1	Wheat	cytosol	12.2	7.21
HORVU3Hr1G092720.1	Barley	cytosol, mitochondrion, nucleus	27.64	7.17
TraesCS5B01G484100.1	Wheat	cytosol	13.01	7.14
TraesCS3D01G413000.1	Wheat	cytosol	25.2	7.08
TraesCS3B01G452500.1	Wheat	cytosol	26.83	6.98
TraesCS5D01G468200.1	Wheat	cytosol, plasma membrane, plastid	11.38	6.93
TraesCS3B01G452400.1	Wheat	cytosol	24.39	6.74
TraesCS3B01G452300.1	Wheat	plastid	25.2	6.67
CDY22112	Canola	cytosol	25.2	6.43
TraesCS3D01G412900.1	Wheat	cytosol, plastid	24.39	6.41
TraesCS5B01G484200.1	Wheat	cytosol, peroxisome, plastid	9.76	6.22
TraesCS3A01G417400.1	Wheat	cytosol	24.39	6.05
TraesCS6B01G067700.1	Wheat	plastid	13.01	5.97
TraesCS2B01G385500.1	Wheat	cytosol, plasma membrane, plastid	10.57	5.8
TraesCS6A01G051000.1	Wheat	plastid	16.26	5.38
TraesCS5D01G484100.1	Wheat	cytosol	13.82	4.58
TraesCS3A01G417500.1	Wheat	cytosol	13.01	4.09
Os08t0195900-00	Rice	cytosol, mitochondrion, nucleus, plastid	8.13	3.31
TraesCS7A01G484100.1	Wheat	cytosol	2.44	3.03
CDY21990	Canola	cytosol	4.07	2.6
TraesCS5B01G081700.1	Wheat	cytosol	2.44	1.81
CDX77948	Canola	cytosol	2.44	1.78
Os08t0193500-00	Rice	cytosol	2.44	1.37
Os08t0194000-00	Rice	cytosol, vacuole	0.81	0.26
CDY21988	Canola	cytosol	0.0	0.0
HORVU2Hr1G020470.1	Barley	mitochondrion	0.0	0.0
OQU80174	Sorghum	cytosol	0.0	0.0
Os08t0193200-00	Rice	cytosol	0.0	0.0
Os08t0195000-00	Rice	cytosol, peroxisome, plastid	0.0	0.0
Os08t0196200-01	Rice	cytosol	0.0	0.0
Os11t0637300-00	Rice	cytosol	0.0	0.0
TraesCS2A01G071400.1	Wheat	cytosol	0.0	0.0
TraesCS4D01G274100.1	Wheat	cytosol	0.0	0.0
TraesCS5B01G466500.1	Wheat	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc08g013780.1.1	EnsemblPlantsGene:Solyc08g013780.1	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44078
PANTHER:PTHR44078:SF5	SUPFAM:SSF52047	UniParc:UPI000276AE9A	UniProt:K4CJ13	MapMan:35.1	:

Description

No Description!

Coordinates

chr8:-:3238976..3239347

Molecular Weight (calculated)

13890.4 Da

IEP (calculated)

4.500

GRAVY (calculated)

-0.102

Length

123 amino acids

Sequence
(BLAST)

001: MFKSFTLNAS EYDTFGNLIS ADDGQALAIA KSMPELRHLV LIANTLTNVG LEAILDGCPH LVSLDLRCSY NIDLGGDLGK RCREQIVDLK QPCASCQDYE
101: FYSEFSHYCF SNDNFLRFRD YIS

Best Arabidopsis Sequence Match ( AT4G03630.1 )
(BLAST)

001: MNNEDFNADE LLTFVAYRSS ILKRLGRMMC HAVALSQGGC VEINIEHFGT DSLLTYIADR SSNLRHLGLA KCDQITGMGL FTEAMKLPLL EDLELSYCLI
101: KGKNLEAIGF ACLHLKTLKL NCQGFKFPGF TYDHDALGIA KRMPELRCLQ LFGNRVSDVG LNAIFDGCPH LEHLDLRQCF NINLVGDLEK RCMERIKDLR
201: RPNDSTADYP YDTSLLDLGI

Arabidopsis Description

Putative nodulin [Source:UniProtKB/TrEMBL;Acc:Q9SY41]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.