Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G098530.4 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | HORVU3Hr1G098530.4 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G313400.1 | Wheat | cytosol | 74.06 | 89.07 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 73.8 | 88.18 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 72.73 | 86.9 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 16.04 | 50.85 |
| Zm00001d024265_P001 | Maize | cytosol | 37.43 | 46.67 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 38.24 | 46.13 |
| OQU80176 | Sorghum | mitochondrion | 23.53 | 39.46 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 29.41 | 39.15 |
| CDY21989 | Canola | cytosol | 8.02 | 37.04 |
| Bra000817.1-P | Field mustard | plastid | 17.65 | 36.67 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 29.14 | 33.64 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 30.21 | 33.33 |
| Bra030342.1-P | Field mustard | cytosol | 20.59 | 33.05 |
| CDY48578 | Canola | cytosol | 21.93 | 32.67 |
| CDX99649 | Canola | cytosol | 20.32 | 32.62 |
| CDY15937 | Canola | cytosol | 20.32 | 32.62 |
| PGSC0003DMT400058969 | Potato | cytosol | 7.75 | 32.58 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 24.87 | 31.96 |
| AT4G03630.1 | Thale cress | cytosol | 18.72 | 31.82 |
| CDX73787 | Canola | cytosol | 21.12 | 30.86 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 26.47 | 30.84 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 24.87 | 30.79 |
| CDY48580 | Canola | cytosol | 25.13 | 30.62 |
| Bra034230.1-P | Field mustard | cytosol | 21.39 | 30.42 |
| CDX77948 | Canola | cytosol | 13.37 | 29.59 |
| Solyc08g013780.1.1 | Tomato | cytosol | 9.63 | 29.27 |
| CDY21986 | Canola | cytosol, plastid | 23.26 | 29.0 |
| Bra034229.1-P | Field mustard | cytosol | 21.39 | 28.99 |
| Solyc08g013800.2.1 | Tomato | cytosol | 22.73 | 28.91 |
| CDY21333 | Canola | nucleus, plastid | 22.73 | 28.91 |
| AT4G05460.1 | Thale cress | cytosol | 23.26 | 28.81 |
| CDY48576 | Canola | cytosol | 22.73 | 28.62 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 19.79 | 28.57 |
| Bra034226.1-P | Field mustard | cytosol | 21.93 | 28.47 |
| AT4G05497.1 | Thale cress | plastid | 18.72 | 28.46 |
| PGSC0003DMT400015035 | Potato | cytosol | 23.26 | 28.43 |
| Bra034228.1-P | Field mustard | cytosol | 22.46 | 28.28 |
| CDY48574 | Canola | cytosol | 22.46 | 28.19 |
| CDY48577 | Canola | cytosol | 21.12 | 28.01 |
| AT4G05490.1 | Thale cress | plastid | 22.99 | 28.01 |
| Bra000816.1-P | Field mustard | plastid | 24.33 | 28.0 |
| Bra034227.1-P | Field mustard | plastid | 23.8 | 27.99 |
| KRH21099 | Soybean | cytosol | 23.26 | 27.97 |
| CDY62000 | Canola | plastid | 24.33 | 27.66 |
| CDY59275 | Canola | plastid | 23.53 | 27.41 |
| CDY10283 | Canola | cytosol | 22.99 | 27.39 |
| CDX86473 | Canola | cytosol | 18.72 | 27.34 |
| Solyc08g006940.2.1 | Tomato | cytosol | 22.73 | 27.33 |
| CDX90789 | Canola | cytosol | 21.93 | 27.24 |
| PGSC0003DMT400016134 | Potato | cytosol | 21.12 | 27.24 |
| CDY21988 | Canola | cytosol | 10.96 | 27.15 |
| CDY48575 | Canola | plastid | 22.99 | 27.13 |
| CDY15618 | Canola | cytosol | 20.32 | 27.05 |
| Bra030690.1-P | Field mustard | cytosol | 20.32 | 27.05 |
| CDY09910 | Canola | nucleus | 22.99 | 26.88 |
| PGSC0003DMT400090939 | Potato | cytosol | 21.66 | 26.73 |
| AT4G05475.1 | Thale cress | cytosol | 21.93 | 26.54 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 21.66 | 26.47 |
| KRH11147 | Soybean | cytosol | 22.46 | 26.42 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 27.81 | 26.26 |
| PGSC0003DMT400015030 | Potato | cytosol | 20.32 | 25.68 |
| AT5G52480.1 | Thale cress | cytosol | 16.31 | 25.31 |
| PGSC0003DMT400052833 | Potato | cytosol | 18.45 | 25.09 |
| Bra000723.1-P | Field mustard | cytosol | 10.16 | 25.0 |
| CDY06267 | Canola | nucleus | 22.99 | 24.71 |
| PGSC0003DMT400054358 | Potato | cytosol | 22.19 | 24.48 |
| Bra031582.1-P | Field mustard | nucleus | 22.73 | 24.29 |
| CDY21990 | Canola | cytosol | 12.03 | 23.44 |
| Solyc08g013820.2.1 | Tomato | cytosol | 23.26 | 23.39 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 13.1 | 23.0 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 26.47 | 20.89 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 16.04 | 20.07 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 15.24 | 18.81 |
| CDY21983 | Canola | cytosol | 13.64 | 18.02 |
| Bra034194.1-P | Field mustard | cytosol | 23.53 | 16.45 |
| CDY22112 | Canola | cytosol | 20.32 | 15.77 |
| Bra020205.1-P | Field mustard | plastid | 23.8 | 15.7 |
| CDY09154 | Canola | plastid | 23.8 | 15.7 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | UniProt:A0A287IJI6 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:HORVU2Hr1G077990 | EnsemblPlants:HORVU2Hr1G077990.2 | InterPro:IPR001810 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | PFAM:PF12937 | PFscan:PS50181 | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF3 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI000B470337 | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr2H:+:564790273..564791715
Molecular Weight (calculated)
41714.9 Da
IEP (calculated)
8.147
GRAVY (calculated)
-0.348
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQIRATFRD VICGRNVLLT PRLGPPFSSR RRRTEPKATR PVPVPVRLDT TRHDAMAAPA PSPSPSPSRH HRPDEPPSEE EAARDWAGLP WDALLAVLHR
101: LDHVDVLMGA GQVCSPWRCA ARDEPELWRR VEVRSHADRR PFHTAEPSRA RRHSCAVLCG LARAAVRRAA GQCEAFCGEG AADDSVLSLL ADEAPSLKSL
201: RIISGDRIVD GRLRLTVTSF TLLEELELSL CTDVYPGTCE AVGSACPRLR RFRLSKDGFC KWYTKNIDQE AMAIATMRGL RSLQLFANPL SNDGLAAILA
301: GCTRLESLDI RHCFNVGMGA AAIRARCPGI HTLRLPRDST IDYDLKFSPQ DMTPWNTQDE NYCDWHDLIY CSSW
101: LDHVDVLMGA GQVCSPWRCA ARDEPELWRR VEVRSHADRR PFHTAEPSRA RRHSCAVLCG LARAAVRRAA GQCEAFCGEG AADDSVLSLL ADEAPSLKSL
201: RIISGDRIVD GRLRLTVTSF TLLEELELSL CTDVYPGTCE AVGSACPRLR RFRLSKDGFC KWYTKNIDQE AMAIATMRGL RSLQLFANPL SNDGLAAILA
301: GCTRLESLDI RHCFNVGMGA AAIRARCPGI HTLRLPRDST IDYDLKFSPQ DMTPWNTQDE NYCDWHDLIY CSSW
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.