Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G098530.4 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | HORVU3Hr1G098530.4 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G119000.1 | Wheat | nucleus | 89.83 | 24.54 |
| CDY21988 | Canola | cytosol | 26.27 | 20.53 |
| CDX77948 | Canola | cytosol | 27.12 | 18.93 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 44.92 | 17.1 |
| HORVU2Hr1G077990.2 | Barley | plastid | 50.85 | 16.04 |
| CDY21990 | Canola | cytosol | 24.58 | 15.1 |
| Bra030342.1-P | Field mustard | cytosol | 26.27 | 13.3 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 36.44 | 13.27 |
| CDY15937 | Canola | cytosol | 25.42 | 12.88 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 29.66 | 12.46 |
| CDX99649 | Canola | cytosol | 24.58 | 12.45 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 30.51 | 12.37 |
| CDY48578 | Canola | cytosol | 25.42 | 11.95 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 30.51 | 11.92 |
| CDX73787 | Canola | cytosol | 25.42 | 11.72 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 25.42 | 11.58 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 31.36 | 11.53 |
| AT4G05497.1 | Thale cress | plastid | 23.73 | 11.38 |
| AT4G05460.1 | Thale cress | cytosol | 28.81 | 11.26 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 37.29 | 11.11 |
| PGSC0003DMT400016134 | Potato | cytosol | 27.12 | 11.03 |
| Bra034230.1-P | Field mustard | cytosol | 24.58 | 11.03 |
| Bra034226.1-P | Field mustard | cytosol | 26.27 | 10.76 |
| KRH21099 | Soybean | cytosol | 27.97 | 10.61 |
| Bra034227.1-P | Field mustard | plastid | 27.97 | 10.38 |
| Bra030690.1-P | Field mustard | cytosol | 24.58 | 10.32 |
| CDY15618 | Canola | cytosol | 24.58 | 10.32 |
| CDX86473 | Canola | cytosol | 22.03 | 10.16 |
| Bra034229.1-P | Field mustard | cytosol | 23.73 | 10.14 |
| CDY48575 | Canola | plastid | 27.12 | 10.09 |
| KRH11147 | Soybean | cytosol | 27.12 | 10.06 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 28.81 | 10.03 |
| PGSC0003DMT400052833 | Potato | cytosol | 22.88 | 9.82 |
| PGSC0003DMT400015035 | Potato | cytosol | 25.42 | 9.8 |
| AT4G05490.1 | Thale cress | plastid | 25.42 | 9.77 |
| CDY48580 | Canola | cytosol | 25.42 | 9.77 |
| CDY48574 | Canola | cytosol | 24.58 | 9.73 |
| CDY59275 | Canola | plastid | 26.27 | 9.66 |
| CDX90789 | Canola | cytosol | 24.58 | 9.63 |
| CDY48577 | Canola | cytosol | 22.88 | 9.57 |
| CDY10283 | Canola | cytosol | 25.42 | 9.55 |
| Bra000816.1-P | Field mustard | plastid | 26.27 | 9.54 |
| CDY21333 | Canola | nucleus, plastid | 23.73 | 9.52 |
| CDY62000 | Canola | plastid | 26.27 | 9.42 |
| Solyc08g013800.2.1 | Tomato | cytosol | 22.88 | 9.18 |
| CDY48576 | Canola | cytosol | 22.88 | 9.09 |
| CDY21986 | Canola | cytosol, plastid | 22.88 | 9.0 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 35.59 | 8.86 |
| CDY09910 | Canola | nucleus | 23.73 | 8.75 |
| Bra031582.1-P | Field mustard | nucleus | 25.42 | 8.57 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 22.03 | 8.5 |
| Bra034228.1-P | Field mustard | cytosol | 21.19 | 8.42 |
| CDY06267 | Canola | nucleus | 24.58 | 8.33 |
| PGSC0003DMT400090939 | Potato | cytosol | 21.19 | 8.25 |
| PGSC0003DMT400015030 | Potato | cytosol | 20.34 | 8.11 |
| AT4G05475.1 | Thale cress | cytosol | 21.19 | 8.09 |
| PGSC0003DMT400054358 | Potato | cytosol | 22.88 | 7.96 |
| Solyc08g006940.2.1 | Tomato | cytosol | 20.34 | 7.72 |
| Solyc08g013820.2.1 | Tomato | cytosol | 23.73 | 7.53 |
| Bra020205.1-P | Field mustard | plastid | 27.12 | 5.64 |
| CDY09154 | Canola | plastid | 27.12 | 5.64 |
| CDY22112 | Canola | cytosol | 22.88 | 5.6 |
| AT4G03630.1 | Thale cress | cytosol | 10.17 | 5.45 |
| Bra000723.1-P | Field mustard | cytosol | 6.78 | 5.26 |
| Bra034194.1-P | Field mustard | cytosol | 22.88 | 5.05 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 11.86 | 4.62 |
| AT5G52480.1 | Thale cress | cytosol | 5.08 | 2.49 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 4.24 | 1.67 |
| PGSC0003DMT400058969 | Potato | cytosol | 0.85 | 1.12 |
| Bra000817.1-P | Field mustard | plastid | 1.69 | 1.11 |
| Solyc08g013780.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 0.0 | 0.0 |
| CDY21983 | Canola | cytosol | 0.0 | 0.0 |
| CDY21989 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G020470.1 | EnsemblPlantsGene:HORVU2Hr1G020470 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF2 | PFAM:PF12937 |
| SEG:seg | SUPFAM:SSF81383 | UniParc:UPI000B4680B9 | UniProt:A0A287HAN3 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr2H:+:55970111..55970500
Molecular Weight (calculated)
13052.7 Da
IEP (calculated)
8.532
GRAVY (calculated)
-0.286
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: RGRRRRKGSA PAPAPAPAAE EARDWAGLLL DALCAILHKL DHVEILTGAG QVCRSWRHAA RDVPALWRRI DMRGHADIHE LDLRGMAQVA VRRSAGQCEA
101: FWGEYAAHEG LILFLGDQ
101: FWGEYAAHEG LILFLGDQ
1: MDSSSSSPMK YEDKPRNWAE LLPELTASIL HRLGVVEILE NAQKVCRPWH RVCKDPSMWR KIDM
Arabidopsis Description
F-box/LRR protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B8Z3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.