Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000874.1-P | |
| Bra003735.1-P | |
| Bra008231.1-P | |
| Bra015801.1-P | |
| Bra036257.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15618 | Canola | cytosol | 99.64 | 99.64 |
| Bra034230.1-P | Field mustard | cytosol | 50.53 | 53.99 |
| Bra034226.1-P | Field mustard | cytosol | 53.38 | 52.08 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 46.26 | 50.19 |
| AT4G05460.1 | Thale cress | cytosol | 53.74 | 50.0 |
| Bra031582.1-P | Field mustard | nucleus | 61.57 | 49.43 |
| Bra034227.1-P | Field mustard | plastid | 55.52 | 49.06 |
| Bra000817.1-P | Field mustard | plastid | 31.32 | 48.89 |
| Bra000816.1-P | Field mustard | plastid | 55.52 | 48.0 |
| Bra034229.1-P | Field mustard | cytosol | 46.98 | 47.83 |
| Bra000723.1-P | Field mustard | cytosol | 25.62 | 47.37 |
| Bra034228.1-P | Field mustard | cytosol | 49.47 | 46.8 |
| Bra030342.1-P | Field mustard | cytosol | 37.72 | 45.49 |
| PGSC0003DMT400058969 | Potato | cytosol | 13.17 | 41.57 |
| KRH21099 | Soybean | cytosol | 45.91 | 41.48 |
| KRH11147 | Soybean | cytosol | 46.26 | 40.88 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 46.26 | 40.5 |
| PGSC0003DMT400052833 | Potato | cytosol | 37.37 | 38.18 |
| PGSC0003DMT400016134 | Potato | cytosol | 38.79 | 37.59 |
| Solyc08g013800.2.1 | Tomato | cytosol | 39.15 | 37.41 |
| Solyc08g006940.2.1 | Tomato | cytosol | 40.57 | 36.66 |
| PGSC0003DMT400090939 | Potato | cytosol | 39.15 | 36.3 |
| PGSC0003DMT400015035 | Potato | cytosol | 39.5 | 36.27 |
| PGSC0003DMT400015030 | Potato | cytosol | 37.72 | 35.81 |
| Solyc08g013780.1.1 | Tomato | cytosol | 15.3 | 34.96 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 31.32 | 32.96 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 30.25 | 32.95 |
| Zm00001d024252_P001 | Maize | cytosol | 29.54 | 31.44 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 11.74 | 31.43 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 19.22 | 31.4 |
| PGSC0003DMT400054358 | Potato | cytosol | 37.37 | 30.97 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 18.86 | 30.81 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 22.06 | 30.54 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 22.06 | 30.54 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 32.38 | 29.74 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 21.35 | 29.7 |
| Solyc08g013820.2.1 | Tomato | cytosol | 39.15 | 29.57 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 34.16 | 29.27 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 21.35 | 29.27 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 24.2 | 29.18 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 21.0 | 29.06 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 35.59 | 28.99 |
| KXG24675 | Sorghum | cytosol | 29.54 | 28.82 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 30.25 | 28.81 |
| Os02t0317500-01 | Rice | cytosol | 33.81 | 28.79 |
| Zm00001d010914_P001 | Maize | cytosol | 33.45 | 28.75 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 33.1 | 28.7 |
| Os08t0194350-00 | Rice | cytosol | 27.05 | 28.57 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 31.32 | 28.57 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 31.32 | 28.57 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 29.54 | 28.52 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 33.1 | 28.35 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 16.73 | 28.31 |
| Bra034194.1-P | Field mustard | cytosol | 53.74 | 28.22 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 33.1 | 28.18 |
| Bra020205.1-P | Field mustard | plastid | 56.58 | 28.04 |
| EES17669 | Sorghum | cytosol | 33.1 | 28.01 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 30.25 | 27.78 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 34.52 | 27.71 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 34.52 | 27.71 |
| EES14679 | Sorghum | nucleus | 33.81 | 27.62 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 30.96 | 27.53 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 28.47 | 27.49 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 31.67 | 27.47 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 33.81 | 27.46 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 29.89 | 27.45 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 30.25 | 27.42 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 30.96 | 27.19 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 33.45 | 27.17 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 29.54 | 26.86 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 33.45 | 26.86 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 30.96 | 26.85 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 32.38 | 26.84 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 28.47 | 26.58 |
| Os02t0317300-01 | Rice | cytosol | 30.96 | 26.52 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 28.47 | 26.49 |
| Zm00001d024265_P001 | Maize | cytosol | 28.11 | 26.33 |
| KXG24670 | Sorghum | cytosol | 29.54 | 26.18 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 29.89 | 26.01 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 19.22 | 25.96 |
| TraesCS2B01G178700.1 | Wheat | plastid | 28.47 | 25.89 |
| Os11t0637300-00 | Rice | cytosol | 11.03 | 25.83 |
| TraesCS6B01G067700.1 | Wheat | plastid | 24.56 | 25.75 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 28.47 | 25.72 |
| TraesCS2D01G159000.1 | Wheat | plastid | 28.11 | 25.57 |
| OQU80176 | Sorghum | mitochondrion | 20.28 | 25.56 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 30.96 | 25.51 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 20.28 | 25.45 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 31.32 | 25.43 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 28.11 | 25.24 |
| Os08t0193200-00 | Rice | cytosol | 10.32 | 25.22 |
| Zm00001d046526_P001 | Maize | plastid | 25.27 | 25.09 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 30.25 | 25.07 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 27.76 | 24.92 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 10.32 | 24.58 |
| OQU80048 | Sorghum | cytosol | 24.91 | 24.56 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 19.57 | 24.55 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 9.25 | 24.53 |
| Zm00001d024764_P001 | Maize | cytosol | 30.96 | 24.37 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 8.54 | 24.24 |
| Os08t0193500-00 | Rice | cytosol | 18.86 | 24.2 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 18.86 | 23.87 |
| Os08t0193900-01 | Rice | nucleus | 33.45 | 23.74 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 23.49 | 23.49 |
| TraesCS7D01G203600.1 | Wheat | plastid | 28.47 | 23.46 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 16.01 | 23.32 |
| TraesCS7D01G203500.1 | Wheat | plastid | 28.11 | 23.24 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 25.98 | 22.74 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 27.4 | 22.58 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 26.33 | 22.42 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 27.76 | 22.41 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 16.73 | 22.07 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 24.91 | 22.01 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 25.98 | 21.79 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 27.05 | 21.47 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 18.51 | 21.4 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 26.69 | 21.25 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 25.98 | 21.16 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 26.33 | 21.14 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 22.78 | 21.12 |
| TraesCS6B01G310200.1 | Wheat | plastid | 27.05 | 21.05 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 31.67 | 20.6 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 19.57 | 20.37 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 24.91 | 20.35 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 24.91 | 20.35 |
| HORVU2Hr1G077990.2 | Barley | plastid | 27.05 | 20.32 |
| OQU80174 | Sorghum | cytosol | 9.61 | 20.15 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 17.79 | 20.0 |
| TraesCS6A01G051000.1 | Wheat | plastid | 26.33 | 19.89 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 9.96 | 19.72 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 32.74 | 19.57 |
| Os08t0191300-00 | Rice | cytosol, golgi | 17.79 | 19.46 |
| Os08t0193300-00 | Rice | cytosol | 22.78 | 19.22 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 27.05 | 19.19 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 29.54 | 18.65 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 28.83 | 18.49 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 30.61 | 18.14 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 30.25 | 17.97 |
| TraesCS3B01G452300.1 | Wheat | plastid | 29.54 | 17.85 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 29.54 | 17.73 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 18.15 | 17.06 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 18.15 | 16.89 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 23.49 | 16.88 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 29.54 | 16.73 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 20.64 | 15.63 |
| Os08t0196200-01 | Rice | cytosol | 9.61 | 9.85 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 0.71 | 0.53 |
Protein Annotations
| EnsemblPlants:Bra030690.1 | EnsemblPlants:Bra030690.1-P | EnsemblPlantsGene:Bra030690 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR44078 | PANTHER:PTHR44078:SF5 | PFAM:PF12937 | PFscan:PS50181 | SEG:seg | SMART:SM00256 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0002546D64 | UniProt:M4EPH0 | MapMan:35.1 | : |
Description
AT4G05460 (E=4e-079) | F-box family protein (FBL20)
Coordinates
chrA08:-:20791822..20793345
Molecular Weight (calculated)
31850.0 Da
IEP (calculated)
4.405
GRAVY (calculated)
-0.274
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQGQEYPNW LELPPELTSS ILNRLGVMEI LESAQKVCRS WRRICKEPLT WSKIDMRNVG HMGGSSHELE KICRHAVERS QGGLVEIEIW HFATHDLLNY
101: IADSSSKLRS LKLAMCYLIE NEGLIEVIAK LPLLEVLEVS YCSLSGEPLE PIVPSSCPNQ MTLGNNCDDV ALAIAESMPG LTRLQLFGNR LTNFGLNAIL
201: DRCPNLEYLD LRQCINVDIV GDMERRCYER IKVLRRPNDP VDDYPYGVSD VDEMSEEYYD NYSAASDYSD TGEDLVSRCF G
101: IADSSSKLRS LKLAMCYLIE NEGLIEVIAK LPLLEVLEVS YCSLSGEPLE PIVPSSCPNQ MTLGNNCDDV ALAIAESMPG LTRLQLFGNR LTNFGLNAIL
201: DRCPNLEYLD LRQCINVDIV GDMERRCYER IKVLRRPNDP VDDYPYGVSD VDEMSEEYYD NYSAASDYSD TGEDLVSRCF G
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.