Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d042193_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | Zm00001d042193_P001 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES17669 | Sorghum | cytosol | 91.44 | 90.06 |
| Os02t0317300-01 | Rice | cytosol | 73.39 | 73.17 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 70.03 | 69.82 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 68.5 | 69.14 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 67.89 | 67.68 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 67.89 | 67.27 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 20.49 | 63.21 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 61.16 | 62.5 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 61.47 | 62.04 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 61.16 | 61.73 |
| Zm00001d024764_P001 | Maize | cytosol | 66.36 | 60.78 |
| Zm00001d024252_P001 | Maize | cytosol | 35.47 | 43.94 |
| PGSC0003DMT400058969 | Potato | cytosol | 10.4 | 38.2 |
| CDX99649 | Canola | cytosol | 26.91 | 37.77 |
| Zm00001d024265_P001 | Maize | cytosol | 34.25 | 37.33 |
| CDY21989 | Canola | cytosol | 9.17 | 37.04 |
| CDY15937 | Canola | cytosol | 26.3 | 36.91 |
| Bra030342.1-P | Field mustard | cytosol | 26.3 | 36.91 |
| Solyc08g013780.1.1 | Tomato | cytosol | 13.76 | 36.59 |
| Bra000817.1-P | Field mustard | plastid | 19.88 | 36.11 |
| KRH21099 | Soybean | cytosol | 34.25 | 36.01 |
| Bra034229.1-P | Field mustard | cytosol | 30.28 | 35.87 |
| CDY48578 | Canola | cytosol | 27.52 | 35.86 |
| Bra034230.1-P | Field mustard | cytosol | 28.44 | 35.36 |
| CDX73787 | Canola | cytosol | 27.52 | 35.16 |
| AT4G05460.1 | Thale cress | cytosol | 32.42 | 35.1 |
| CDX90789 | Canola | cytosol | 32.11 | 34.88 |
| PGSC0003DMT400052833 | Potato | cytosol | 29.05 | 34.55 |
| CDY48580 | Canola | cytosol | 32.42 | 34.53 |
| PGSC0003DMT400016134 | Potato | cytosol | 30.58 | 34.48 |
| Bra034226.1-P | Field mustard | cytosol | 30.28 | 34.38 |
| CDY21333 | Canola | nucleus, plastid | 30.89 | 34.35 |
| KRH11147 | Soybean | cytosol | 33.33 | 34.28 |
| Bra034227.1-P | Field mustard | plastid | 33.33 | 34.28 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 33.64 | 34.27 |
| AT4G05497.1 | Thale cress | plastid | 25.69 | 34.15 |
| Solyc08g006940.2.1 | Tomato | cytosol | 32.42 | 34.08 |
| CDY59275 | Canola | plastid | 33.33 | 33.96 |
| CDY21988 | Canola | cytosol | 15.6 | 33.77 |
| AT4G03630.1 | Thale cress | cytosol | 22.63 | 33.64 |
| CDX86473 | Canola | cytosol | 26.3 | 33.59 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 26.61 | 33.59 |
| CDY48574 | Canola | cytosol | 30.58 | 33.56 |
| CDY15618 | Canola | cytosol | 28.75 | 33.45 |
| Bra030690.1-P | Field mustard | cytosol | 28.75 | 33.45 |
| Zm00001d046526_P001 | Maize | plastid | 28.75 | 33.22 |
| CDY48575 | Canola | plastid | 32.11 | 33.12 |
| AT4G05490.1 | Thale cress | plastid | 30.89 | 32.9 |
| Bra000723.1-P | Field mustard | cytosol | 15.29 | 32.89 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 22.32 | 32.88 |
| AT5G52480.1 | Thale cress | cytosol | 24.16 | 32.78 |
| PGSC0003DMT400015035 | Potato | cytosol | 30.58 | 32.68 |
| CDY48576 | Canola | cytosol | 29.66 | 32.66 |
| Bra000816.1-P | Field mustard | plastid | 32.11 | 32.31 |
| CDY48577 | Canola | cytosol | 27.83 | 32.27 |
| CDY62000 | Canola | plastid | 32.11 | 31.91 |
| PGSC0003DMT400090939 | Potato | cytosol | 29.36 | 31.68 |
| CDY21986 | Canola | cytosol, plastid | 29.05 | 31.67 |
| Bra034228.1-P | Field mustard | cytosol | 28.75 | 31.65 |
| Solyc08g013800.2.1 | Tomato | cytosol | 28.13 | 31.29 |
| CDY09910 | Canola | nucleus | 30.58 | 31.25 |
| AT4G05475.1 | Thale cress | cytosol | 29.05 | 30.74 |
| CDX77948 | Canola | cytosol | 15.6 | 30.18 |
| PGSC0003DMT400054358 | Potato | cytosol | 31.19 | 30.09 |
| PGSC0003DMT400015030 | Potato | cytosol | 27.22 | 30.07 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 28.13 | 30.07 |
| CDY10283 | Canola | cytosol | 27.83 | 28.98 |
| CDY06267 | Canola | nucleus | 29.97 | 28.16 |
| Bra031582.1-P | Field mustard | nucleus | 29.66 | 27.71 |
| Solyc08g013820.2.1 | Tomato | cytosol | 30.28 | 26.61 |
| CDY21990 | Canola | cytosol | 15.29 | 26.04 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 21.71 | 23.43 |
| CDY21983 | Canola | cytosol | 19.57 | 22.61 |
| CDY09154 | Canola | plastid | 33.03 | 19.05 |
| Bra020205.1-P | Field mustard | plastid | 33.03 | 19.05 |
| Bra034194.1-P | Field mustard | cytosol | 29.66 | 18.13 |
| CDY22112 | Canola | cytosol | 25.69 | 17.43 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | ProteinID:AQK95252.1 | UniProt:B4G0W0 | EMBL:BT042998 |
| EMBL:BT067916 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0016874 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp |
| PFAM:PF12937 | PFscan:PS50181 | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF4 | SMART:SM00367 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | UniParc:UPI00017B786B | EnsemblPlantsGene:Zm00001d010914 | EnsemblPlants:Zm00001d010914_P001 | EnsemblPlants:Zm00001d010914_T001 | SEG:seg |
Description
F-box protein SKIP19
Coordinates
chr8:-:133297510..133300574
Molecular Weight (calculated)
36454.7 Da
IEP (calculated)
3.906
GRAVY (calculated)
-0.198
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPPPASPM AAENEACDWA EMPSDALAAV FAKLDVAEIL SGAGLVCRSW RRLAASDPTL WRRVDMCYQG DQLQTEEVEA MARAAVDRSA GTMEAFCAET
101: FVNDDLLRYI SQRAPSLKSL HLCLCHYVTN QGFAEAVNCF PQLEELDITF CSLYGIVCET AGRACPQLKC FRLNERWSIL QSEFAPYEGM DDDTEALGIA
201: STMPGLQELQ LIGNNLTNDG LVAILDRCPR LESLDIRQCY NIQMDDALRS KCARIRYLKL PHDSISDFKY RAYIVSSIAN SGSDFEVDMY DDLLDVVTED
301: DDADFDDMDD FDDTVSDGGM YDDDLDI
101: FVNDDLLRYI SQRAPSLKSL HLCLCHYVTN QGFAEAVNCF PQLEELDITF CSLYGIVCET AGRACPQLKC FRLNERWSIL QSEFAPYEGM DDDTEALGIA
201: STMPGLQELQ LIGNNLTNDG LVAILDRCPR LESLDIRQCY NIQMDDALRS KCARIRYLKL PHDSISDFKY RAYIVSSIAN SGSDFEVDMY DDLLDVVTED
301: DDADFDDMDD FDDTVSDGGM YDDDLDI
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.