Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15937 | Canola | cytosol | 92.7 | 92.7 |
| CDY21988 | Canola | cytosol | 35.62 | 54.97 |
| AT4G05497.1 | Thale cress | plastid | 52.79 | 50.0 |
| CDX77948 | Canola | cytosol | 35.19 | 48.52 |
| CDY48578 | Canola | cytosol | 49.79 | 46.22 |
| CDY48574 | Canola | cytosol | 57.51 | 44.97 |
| CDX90789 | Canola | cytosol | 57.08 | 44.19 |
| CDX73787 | Canola | cytosol | 48.07 | 43.75 |
| AT4G05490.1 | Thale cress | plastid | 57.51 | 43.65 |
| CDY48577 | Canola | cytosol | 52.36 | 43.26 |
| CDY21333 | Canola | nucleus, plastid | 54.08 | 42.86 |
| CDY48576 | Canola | cytosol | 52.79 | 41.41 |
| CDY48580 | Canola | cytosol | 54.51 | 41.37 |
| CDY09910 | Canola | nucleus | 56.22 | 40.94 |
| CDY21986 | Canola | cytosol, plastid | 52.36 | 40.67 |
| CDY48575 | Canola | plastid | 54.51 | 40.06 |
| CDX86473 | Canola | cytosol | 43.78 | 39.84 |
| CDY59275 | Canola | plastid | 54.51 | 39.56 |
| CDY15618 | Canola | cytosol | 47.64 | 39.5 |
| CDY21990 | Canola | cytosol | 32.19 | 39.06 |
| CDY10283 | Canola | cytosol | 51.93 | 38.53 |
| CDY06267 | Canola | nucleus | 57.51 | 38.51 |
| PGSC0003DMT400052833 | Potato | cytosol | 45.06 | 38.18 |
| CDY62000 | Canola | plastid | 52.36 | 37.08 |
| PGSC0003DMT400016134 | Potato | cytosol | 45.49 | 36.55 |
| PGSC0003DMT400058969 | Potato | cytosol | 13.73 | 35.96 |
| KRH21099 | Soybean | cytosol | 45.92 | 34.41 |
| PGSC0003DMT400090939 | Potato | cytosol | 44.21 | 33.99 |
| KRH11147 | Soybean | cytosol | 45.06 | 33.02 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 23.18 | 32.53 |
| Solyc08g006940.2.1 | Tomato | cytosol | 43.35 | 32.48 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 36.91 | 32.21 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 44.21 | 32.09 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 14.59 | 32.08 |
| PGSC0003DMT400015035 | Potato | cytosol | 42.06 | 32.03 |
| Solyc08g013800.2.1 | Tomato | cytosol | 40.34 | 31.97 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 35.19 | 31.78 |
| CDY21989 | Canola | cytosol | 10.73 | 30.86 |
| PGSC0003DMT400015030 | Potato | cytosol | 38.63 | 30.41 |
| Solyc08g013780.1.1 | Tomato | cytosol | 15.88 | 30.08 |
| PGSC0003DMT400054358 | Potato | cytosol | 43.35 | 29.79 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 13.3 | 29.52 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 25.32 | 28.78 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 35.62 | 28.52 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 24.46 | 28.08 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 24.46 | 28.08 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 35.19 | 27.8 |
| Zm00001d024252_P001 | Maize | cytosol | 31.33 | 27.65 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 36.05 | 27.45 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 11.59 | 27.27 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 40.34 | 27.25 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 23.61 | 27.23 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 35.62 | 27.12 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 23.61 | 27.09 |
| Zm00001d010914_P001 | Maize | cytosol | 37.77 | 26.91 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 37.34 | 26.85 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 37.77 | 26.83 |
| Os11t0637300-00 | Rice | cytosol | 13.73 | 26.67 |
| Os02t0317300-01 | Rice | cytosol | 36.91 | 26.22 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 26.18 | 26.18 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 19.31 | 26.16 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 32.62 | 26.12 |
| KXG24675 | Sorghum | cytosol | 32.19 | 26.04 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 39.06 | 26.0 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 23.18 | 25.96 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 37.77 | 25.96 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 36.48 | 25.91 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 33.91 | 25.82 |
| Solyc08g013820.2.1 | Tomato | cytosol | 41.2 | 25.81 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 38.63 | 25.71 |
| Zm00001d024265_P001 | Maize | cytosol | 33.05 | 25.67 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 33.91 | 25.65 |
| EES17669 | Sorghum | cytosol | 36.48 | 25.6 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 18.88 | 25.58 |
| KXG24670 | Sorghum | cytosol | 34.76 | 25.55 |
| Os02t0317500-01 | Rice | cytosol | 36.05 | 25.45 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 36.05 | 25.45 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 35.19 | 25.31 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 32.62 | 25.25 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 33.48 | 25.24 |
| Os08t0193200-00 | Rice | cytosol | 12.45 | 25.22 |
| Os08t0194350-00 | Rice | cytosol | 28.76 | 25.19 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 32.62 | 25.17 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 37.34 | 25.14 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 37.77 | 25.14 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 36.48 | 25.07 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 33.05 | 25.0 |
| EES14679 | Sorghum | nucleus | 36.48 | 24.71 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 33.91 | 24.69 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 33.48 | 24.68 |
| TraesCS2B01G178700.1 | Wheat | plastid | 32.62 | 24.6 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 12.45 | 24.58 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 32.62 | 24.52 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 32.62 | 24.44 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 33.91 | 24.38 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 32.62 | 24.28 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 32.62 | 24.28 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 36.05 | 24.28 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 36.05 | 24.28 |
| CDY22112 | Canola | cytosol | 50.21 | 24.27 |
| TraesCS2D01G159000.1 | Wheat | plastid | 32.19 | 24.27 |
| TraesCS6B01G067700.1 | Wheat | plastid | 27.47 | 23.88 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 22.75 | 23.66 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 32.62 | 23.53 |
| Os08t0193500-00 | Rice | cytosol | 21.89 | 23.29 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 33.91 | 23.17 |
| OQU80174 | Sorghum | cytosol | 13.3 | 23.13 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 31.76 | 23.05 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 21.46 | 22.52 |
| TraesCS7D01G203500.1 | Wheat | plastid | 32.62 | 22.35 |
| Zm00001d046526_P001 | Maize | plastid | 27.04 | 22.26 |
| CDY09154 | Canola | plastid | 54.08 | 22.22 |
| Zm00001d024764_P001 | Maize | cytosol | 33.91 | 22.13 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 31.76 | 22.09 |
| OQU80176 | Sorghum | mitochondrion | 21.03 | 21.97 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 13.3 | 21.83 |
| TraesCS7D01G203600.1 | Wheat | plastid | 31.76 | 21.7 |
| CDY21983 | Canola | cytosol | 26.18 | 21.55 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 32.62 | 21.53 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 20.6 | 21.43 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 32.19 | 21.43 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 31.33 | 21.22 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 32.19 | 21.19 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 27.47 | 21.12 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 30.9 | 20.93 |
| Os08t0193900-01 | Rice | nucleus | 35.19 | 20.71 |
| OQU80048 | Sorghum | cytosol | 25.32 | 20.7 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 27.9 | 20.44 |
| HORVU2Hr1G077990.2 | Barley | plastid | 32.62 | 20.32 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 28.76 | 20.3 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 16.31 | 19.69 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 29.18 | 19.54 |
| Os08t0193300-00 | Rice | cytosol | 27.47 | 19.22 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 23.18 | 19.22 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 27.9 | 19.06 |
| TraesCS6B01G310200.1 | Wheat | plastid | 29.18 | 18.84 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 17.17 | 18.78 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 34.76 | 18.75 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 27.04 | 18.26 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 18.88 | 18.11 |
| TraesCS6A01G051000.1 | Wheat | plastid | 28.33 | 17.74 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 30.04 | 17.68 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 18.88 | 17.6 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 35.19 | 17.45 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 22.32 | 17.39 |
| Os08t0191300-00 | Rice | cytosol, golgi | 18.88 | 17.12 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 21.46 | 16.56 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 30.9 | 16.44 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 30.9 | 16.18 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 32.62 | 16.03 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 18.45 | 15.93 |
| TraesCS3B01G452300.1 | Wheat | plastid | 31.33 | 15.7 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 31.76 | 15.64 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 26.18 | 15.6 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 31.33 | 15.6 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 31.33 | 14.72 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 22.75 | 14.29 |
| Os08t0196200-01 | Rice | cytosol | 12.45 | 10.58 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 0.43 | 0.26 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EnsemblPlants:CDX99649 | ProteinID:CDX99649 | ProteinID:CDX99649.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00108163001 | InterPro:IPR001810 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | PFAM:PF12937 | PFscan:PS50181 | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF5 |
| SMART:SM00256 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0004EEBD3D | SEG:seg | : |
Description
BnaC04g34060D
Coordinates
chrLK031912:+:633363..634216
Molecular Weight (calculated)
26665.4 Da
IEP (calculated)
5.336
GRAVY (calculated)
-0.118
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDAKLINWA ELPPELIYSI LLRLSVPDRL GNARNVCRSW RRVCQDPLMW RKIEMRDMGE YKEAMDYYHA AEAMCRRAVD LSQGGLFEVN IEYFGTDSLL
101: AYIADRSSNL KHLVLTECNH ITDVGLLEAV MKLKLLEHLE LSHFYFMELD LESIGLSCPL LKTLKLNNVG YYYLEDESDD DALAIAKTMT GLHHLQLIGN
201: RLTNTGLNAI VENCPHLKSL DLRDCGYINL APQ
101: AYIADRSSNL KHLVLTECNH ITDVGLLEAV MKLKLLEHLE LSHFYFMELD LESIGLSCPL LKTLKLNNVG YYYLEDESDD DALAIAKTMT GLHHLQLIGN
201: RLTNTGLNAI VENCPHLKSL DLRDCGYINL APQ
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.