CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04173

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	EES04173	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14679	Sorghum	nucleus	44.04	60.17
HORVU2Hr1G020540.2	Barley	cytosol	33.62	56.23
TraesCS2A01G119000.1	Wheat	nucleus	51.49	56.02
Os08t0193900-01	Rice	nucleus	45.11	53.54
OQU80048	Sorghum	cytosol	25.53	42.11
OQU80176	Sorghum	mitochondrion	19.15	40.36
EES17669	Sorghum	cytosol	28.09	39.76
OQU80174	Sorghum	cytosol	11.28	39.55
Bra000817.1-P	Field mustard	plastid	14.89	38.89
Os08t0194350-00	Rice	cytosol	21.49	37.97
CDY21989	Canola	cytosol	6.38	37.04
KXG24675	Sorghum	cytosol	22.34	36.46
CDY48580	Canola	cytosol	23.62	36.16
Bra034227.1-P	Field mustard	plastid	24.04	35.53
CDX99649	Canola	cytosol	17.45	35.19
CDY48578	Canola	cytosol	18.72	35.06
KRH21099	Soybean	cytosol	23.19	35.05
CDY48575	Canola	plastid	23.62	35.02
AT4G03630.1	Thale cress	cytosol	16.38	35.0
CDY15937	Canola	cytosol	17.23	34.76
VIT_10s0003g04300.t01	Wine grape	cytosol	23.62	34.58
AT4G05460.1	Thale cress	cytosol	22.13	34.44
Bra034231.1-P	Field mustard	cytosol, plastid	18.94	34.36
CDY21333	Canola	nucleus, plastid	21.49	34.35
CDY48576	Canola	cytosol	21.7	34.34
Bra030342.1-P	Field mustard	cytosol	17.02	34.33
Bra034230.1-P	Field mustard	cytosol	19.15	34.22
CDX90789	Canola	cytosol	21.7	33.89
CDY21988	Canola	cytosol	10.85	33.77
Bra034226.1-P	Field mustard	cytosol	20.64	33.68
Bra034228.1-P	Field mustard	cytosol	21.28	33.67
CDX73787	Canola	cytosol	18.3	33.59
CDX86473	Canola	cytosol	18.3	33.59
CDY21986	Canola	cytosol, plastid	21.28	33.33
CDY48574	Canola	cytosol	21.06	33.22
KRH11147	Soybean	cytosol	22.34	33.02
Bra034229.1-P	Field mustard	cytosol	19.36	32.97
CDY15618	Canola	cytosol	19.57	32.74
Bra030690.1-P	Field mustard	cytosol	19.57	32.74
AT4G05490.1	Thale cress	plastid	21.28	32.57
Solyc08g013780.1.1	Tomato	cytosol	8.51	32.52
CDY59275	Canola	plastid	22.13	32.4
KXG24670	Sorghum	cytosol	21.7	32.18
Bra000816.1-P	Field mustard	plastid	22.13	32.0
AT4G05497.1	Thale cress	plastid	16.6	31.71
CDY62000	Canola	plastid	22.13	31.61
AT4G05475.1	Thale cress	cytosol	20.64	31.39
PGSC0003DMT400016134	Potato	cytosol	19.36	31.38
PGSC0003DMT400015035	Potato	cytosol	20.43	31.37
CDY09910	Canola	nucleus	21.06	30.94
Solyc08g006940.2.1	Tomato	cytosol	20.43	30.87
CDY48577	Canola	cytosol	18.51	30.85
AT4G05470.1	Thale cress	cytosol, plastid	20.0	30.72
Bra000723.1-P	Field mustard	cytosol	9.79	30.26
CDY10283	Canola	cytosol	20.0	29.94
Solyc08g013800.2.1	Tomato	cytosol	18.72	29.93
PGSC0003DMT400052833	Potato	cytosol	17.45	29.82
CDX77948	Canola	cytosol	10.64	29.59
PGSC0003DMT400058969	Potato	cytosol	5.53	29.21
Bra031582.1-P	Field mustard	nucleus	21.7	29.14
PGSC0003DMT400090939	Potato	cytosol	18.72	29.04
CDY06267	Canola	nucleus	21.49	29.02
PGSC0003DMT400054358	Potato	cytosol	20.43	28.32
AT5G52480.1	Thale cress	cytosol	14.26	27.8
PGSC0003DMT400015030	Potato	cytosol	17.02	27.03
Solyc08g013820.2.1	Tomato	cytosol	20.43	25.81
CDY21990	Canola	cytosol	10.43	25.52
CDY21983	Canola	cytosol	13.4	22.26
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	12.77	19.8
Bra034194.1-P	Field mustard	cytosol	21.49	18.88
CDY09154	Canola	plastid	22.34	18.52
Bra020205.1-P	Field mustard	plastid	22.34	18.52
CDY22112	Canola	cytosol	17.66	17.22
Os08t0194000-00	Rice	cytosol, vacuole	4.04	5.03

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:8085020	UniProt:C5YIE0	EnsemblPlants:EES14677
ProteinID:EES14677	ProteinID:EES14677.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
PFAM:PF12937	PFAM:PF13516	PFscan:PS50181	PANTHER:PTHR44078	PANTHER:PTHR44078:SF3	EnsemblPlantsGene:SORBI_3007G070300
SUPFAM:SSF52047	SUPFAM:SSF81383	unigene:Sbi.16888	UniParc:UPI0001A87DBC	RefSeq:XP_002445182.1	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:7800925..7805233

Molecular Weight (calculated)

53169.4 Da

IEP (calculated)

4.998

GRAVY (calculated)

-0.712

Length

470 amino acids

Sequence
(BLAST)

001: MPSTSRRRRR NKPATPAPHP EAEEPARGTP SRGPTWVPRF PPPAAFARSL HLAPDAAAVE QARGPVPSPR PPPLAVFAHK PDIAPRPSPP NPSPFEPEAR
101: APMPPPPPPS SSSSSSSGRR RRRNRGRGRK KDEAQEETRD WAALPLDAIS AILRKLDHIE ILLGAGKVCR SWRHAARDEP SLWRRIDMLG HPDLDRRVNL
201: YGMAQAAIRR AKGQCEAFWA EYAADDDVLH LLGDEAPALK SLRLIACQDI VEFEEEIRKF PLLEELEISL FTNIDGKRVF EEVGKACPEL KHFRFNKYRF
301: HNFGDIEYSE DDDSEIKYNK DDNALGIASM HGLRSLQLFG NDFTNEGLTA ILDNCPHLEF LDIRHCFNIQ MDDALRAKCA AIKTLKPPYD STDDYNLQFE
401: GPIWSPSGLG IDFDTDSDGC DYILDSDDYD DYCDPMRYLD GVYESELGPE DRMFLKGMRM LMRDDDDDDY

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.