Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EES04173 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | EES04173 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G274100.1 | Wheat | cytosol | 38.81 | 36.62 |
| CDY21988 | Canola | cytosol | 23.13 | 20.53 |
| CDX77948 | Canola | cytosol | 23.88 | 18.93 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 39.55 | 17.55 |
| CDY21990 | Canola | cytosol | 23.13 | 16.15 |
| KXG24675 | Sorghum | cytosol | 33.58 | 15.62 |
| EES14679 | Sorghum | nucleus | 38.06 | 14.83 |
| EES17669 | Sorghum | cytosol | 35.82 | 14.46 |
| KXG24670 | Sorghum | cytosol | 32.84 | 13.88 |
| CDY15937 | Canola | cytosol | 23.88 | 13.73 |
| Bra030342.1-P | Field mustard | cytosol | 23.88 | 13.73 |
| CDX99649 | Canola | cytosol | 23.13 | 13.3 |
| AT4G05497.1 | Thale cress | plastid | 23.13 | 12.6 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 23.88 | 12.36 |
| CDY48578 | Canola | cytosol | 22.39 | 11.95 |
| Bra034230.1-P | Field mustard | cytosol | 22.39 | 11.41 |
| CDX73787 | Canola | cytosol | 21.64 | 11.33 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 39.55 | 11.28 |
| PGSC0003DMT400016134 | Potato | cytosol | 23.88 | 11.03 |
| Bra034229.1-P | Field mustard | cytosol | 22.39 | 10.87 |
| CDY48576 | Canola | cytosol | 23.88 | 10.77 |
| CDY48580 | Canola | cytosol | 23.88 | 10.42 |
| AT4G05490.1 | Thale cress | plastid | 23.88 | 10.42 |
| Bra034226.1-P | Field mustard | cytosol | 22.39 | 10.42 |
| CDY21986 | Canola | cytosol, plastid | 23.13 | 10.33 |
| CDY48577 | Canola | cytosol | 21.64 | 10.28 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 24.63 | 10.28 |
| CDY59275 | Canola | plastid | 24.63 | 10.28 |
| AT4G05460.1 | Thale cress | cytosol | 23.13 | 10.26 |
| CDX86473 | Canola | cytosol | 19.4 | 10.16 |
| Bra034228.1-P | Field mustard | cytosol | 22.39 | 10.1 |
| CDX90789 | Canola | cytosol | 22.39 | 9.97 |
| Bra000816.1-P | Field mustard | plastid | 23.88 | 9.85 |
| CDY48575 | Canola | plastid | 23.13 | 9.78 |
| CDY48574 | Canola | cytosol | 21.64 | 9.73 |
| CDY62000 | Canola | plastid | 23.88 | 9.73 |
| Bra030690.1-P | Field mustard | cytosol | 20.15 | 9.61 |
| CDY15618 | Canola | cytosol | 20.15 | 9.61 |
| CDY21333 | Canola | nucleus, plastid | 20.9 | 9.52 |
| PGSC0003DMT400052833 | Potato | cytosol | 19.4 | 9.45 |
| Solyc08g013800.2.1 | Tomato | cytosol | 20.15 | 9.18 |
| PGSC0003DMT400015035 | Potato | cytosol | 20.9 | 9.15 |
| Bra034227.1-P | Field mustard | plastid | 21.64 | 9.12 |
| CDY09910 | Canola | nucleus | 21.64 | 9.06 |
| KRH21099 | Soybean | cytosol | 20.9 | 9.0 |
| CDY10283 | Canola | cytosol | 20.9 | 8.92 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 20.15 | 8.82 |
| PGSC0003DMT400054358 | Potato | cytosol | 21.64 | 8.55 |
| AT4G05475.1 | Thale cress | cytosol | 19.4 | 8.41 |
| CDY06267 | Canola | nucleus | 21.64 | 8.33 |
| KRH11147 | Soybean | cytosol | 19.4 | 8.18 |
| PGSC0003DMT400015030 | Potato | cytosol | 17.91 | 8.11 |
| Bra031582.1-P | Field mustard | nucleus | 20.9 | 8.0 |
| PGSC0003DMT400090939 | Potato | cytosol | 17.91 | 7.92 |
| Solyc08g006940.2.1 | Tomato | cytosol | 17.16 | 7.4 |
| OQU80048 | Sorghum | cytosol | 14.93 | 7.02 |
| Solyc08g013820.2.1 | Tomato | cytosol | 19.4 | 6.99 |
| CDY22112 | Canola | cytosol | 23.88 | 6.64 |
| Bra034194.1-P | Field mustard | cytosol | 23.88 | 5.98 |
| AT4G03630.1 | Thale cress | cytosol | 9.7 | 5.91 |
| Bra020205.1-P | Field mustard | plastid | 24.63 | 5.82 |
| CDY09154 | Canola | plastid | 24.63 | 5.82 |
| Bra000723.1-P | Field mustard | cytosol | 5.22 | 4.61 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 8.21 | 3.63 |
| AT5G52480.1 | Thale cress | cytosol | 5.22 | 2.9 |
| OQU80176 | Sorghum | mitochondrion | 3.73 | 2.24 |
| Bra000817.1-P | Field mustard | plastid | 2.99 | 2.22 |
| PGSC0003DMT400058969 | Potato | cytosol | 0.0 | 0.0 |
| CDY21989 | Canola | cytosol | 0.0 | 0.0 |
| Solyc08g013780.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| CDY21983 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:OQU80174 | EnsemblPlantsGene:SORBI_3007G090445 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF2 | PFAM:PF12937 |
| PFscan:PS50181 | ProteinID:OQU80174 | ProteinID:OQU80174.1 | SEG:seg | SUPFAM:SSF81383 | UniParc:UPI000B8BA503 |
| UniProt:A0A1Z5R8T1 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:+:13824193..13825132
Molecular Weight (calculated)
15383.4 Da
IEP (calculated)
6.793
GRAVY (calculated)
-0.412
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDTRQRHHR PHLVDQGLPP VQQLLLLPTG VEDETRDWAE LPLDALLSVL RRLDAVDVLM GPGHVCRPWR RVTQEEPDLW RNIDMRHHGK LANGVDLQPA
101: ARAAVRRSSG RCEAFWAQSF GVDRDQFFFF LADA
101: ARAAVRRSSG RCEAFWAQSF GVDRDQFFFF LADA
1: MDSSSSSPMK YEDKPRNWAE LLPELTASIL HRLGVVEILE NAQKVCRPWH RVCKDPSMWR KIDM
Arabidopsis Description
F-box/LRR protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B8Z3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.