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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
EES04173

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G05460.1 EES04173 AT4G02570.1 12795696
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G466500.1 Wheat extracellular 20.83 57.14
Os11t0637300-00 Rice cytosol 21.18 50.83
TraesCS5D01G484300.1 Wheat cytosol 34.38 48.77
TraesCS5D01G100900.1 Wheat endoplasmic reticulum 28.82 48.26
TraesCS5D01G468200.1 Wheat cytosol, plasma membrane, plastid 32.64 46.53
TraesCS5B01G094800.1 Wheat endoplasmic reticulum 27.78 46.51
TraesCS5A01G471800.1 Wheat cytosol 32.64 46.31
TraesCS5B01G484300.1 Wheat cytosol 32.64 46.31
Zm00001d024252_P001 Maize cytosol 42.01 45.83
TraesCS5B01G484500.1 Wheat cytosol 31.6 44.39
TraesCS5B01G484600.1 Wheat cytosol 30.56 42.31
TraesCS5B01G484200.1 Wheat cytosol, peroxisome, plastid 28.12 41.97
HORVU2Hr1G027710.1 Barley cytosol 42.36 41.92
HORVU2Hr1G027770.2 Barley mitochondrion 42.71 40.73
TraesCS2B01G385500.1 Wheat cytosol, plasma membrane, plastid 29.51 37.95
TraesCS5B01G484100.1 Wheat cytosol 29.51 37.95
CDX73787 Canola cytosol 32.64 36.72
CDX77948 Canola cytosol 20.49 34.91
CDY21988 Canola cytosol 18.06 34.44
AT4G03630.1 Thale cress cytosol 26.04 34.09
OQU80174 Sorghum cytosol 15.62 33.58
CDY21989 Canola cytosol 9.38 33.33
Os08t0195000-00 Rice cytosol, peroxisome, plastid 28.82 33.2
EES17669 Sorghum cytosol 37.85 32.83
CDY48578 Canola cytosol 28.47 32.67
KXG24670 Sorghum cytosol 35.76 32.49
Bra034230.1-P Field mustard cytosol 29.51 32.32
CDY15937 Canola cytosol 26.04 32.19
CDX99649 Canola cytosol 26.04 32.19
CDY21333 Canola nucleus, plastid 32.64 31.97
VIT_10s0003g04300.t01 Wine grape cytosol 34.72 31.15
PGSC0003DMT400016134 Potato cytosol 31.25 31.03
EES14679 Sorghum nucleus 36.81 30.81
Bra034229.1-P Field mustard cytosol 29.51 30.8
Bra030342.1-P Field mustard cytosol 24.65 30.47
CDX90789 Canola cytosol 31.6 30.23
Bra034227.1-P Field mustard plastid 33.33 30.19
PGSC0003DMT400052833 Potato cytosol 28.82 30.18
AT4G05497.1 Thale cress plastid 25.69 30.08
Solyc08g006940.2.1 Tomato cytosol 32.29 29.9
Bra034226.1-P Field mustard cytosol 29.86 29.86
PGSC0003DMT400090939 Potato cytosol 31.25 29.7
CDY48575 Canola plastid 32.64 29.65
AT4G05490.1 Thale cress plastid 31.6 29.64
Bra030690.1-P Field mustard cytosol 28.82 29.54
CDY15618 Canola cytosol 28.82 29.54
CDX86473 Canola cytosol 26.04 29.3
PGSC0003DMT400015035 Potato cytosol 30.9 29.09
Bra034231.1-P Field mustard cytosol, plastid 26.04 28.96
KRH21099 Soybean cytosol 31.25 28.94
Bra000817.1-P Field mustard plastid 18.06 28.89
CDY48577 Canola cytosol 28.12 28.72
CDY48580 Canola cytosol 30.56 28.66
CDY62000 Canola plastid 32.64 28.57
AT4G05460.1 Thale cress cytosol 29.86 28.48
Solyc08g013780.1.1 Tomato cytosol 12.15 28.46
AT4G05475.1 Thale cress cytosol 30.21 28.16
AT4G05470.1 Thale cress cytosol, plastid 29.86 28.1
PGSC0003DMT400058969 Potato cytosol 8.68 28.09
Solyc08g013800.2.1 Tomato cytosol 28.47 27.89
PGSC0003DMT400015030 Potato cytosol 28.47 27.7
CDY21986 Canola cytosol, plastid 28.82 27.67
CDY48576 Canola cytosol 28.47 27.61
CDY48574 Canola cytosol 28.47 27.52
KRH11147 Soybean cytosol 30.21 27.36
CDY21990 Canola cytosol 18.06 27.08
OQU80048 Sorghum cytosol 26.74 27.02
Bra000723.1-P Field mustard cytosol 14.24 26.97
AT5G52480.1 Thale cress cytosol 22.57 26.97
Bra034228.1-P Field mustard cytosol 27.78 26.94
Bra000816.1-P Field mustard plastid 30.21 26.77
CDY09910 Canola nucleus 29.51 26.56
OQU80176 Sorghum mitochondrion 20.14 26.01
PGSC0003DMT400054358 Potato cytosol 30.56 25.96
CDY59275 Canola plastid 28.82 25.86
Os08t0191300-00 Rice cytosol, golgi 22.22 24.9
CDY06267 Canola nucleus 29.86 24.71
CDY10283 Canola cytosol 26.74 24.52
Bra031582.1-P Field mustard nucleus 29.51 24.29
TraesCS5D01G484100.1 Wheat cytosol 31.25 24.26
Solyc08g013820.2.1 Tomato cytosol 29.51 22.85
EES14677 Sorghum cytosol, mitochondrion, nucleus, plastid 36.46 22.34
CDY21983 Canola cytosol 18.06 18.37
Solyc08g006920.1.1 Tomato cytosol, mitochondrion, nucleus 18.4 17.49
Bra034194.1-P Field mustard cytosol 28.12 15.14
Bra020205.1-P Field mustard plastid 28.82 14.64
CDY09154 Canola plastid 28.82 14.64
CDY22112 Canola cytosol 24.31 14.52
Protein Annotations
EnsemblPlants:KXG24675EnsemblPlantsGene:SORBI_3007G070700Gene3D:1.20.1280.50Gene3D:3.80.10.10GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:F-box-like_dom_sfInterPro:IPR032675InterPro:LRR_dom_sfPANTHER:PTHR44078ProteinID:KXG24674.1
ProteinID:KXG24675ProteinID:KXG24675.1SUPFAM:SSF52047SUPFAM:SSF81383UniParc:UPI00081AD415UniProt:A0A1B6PG51
MapMan:35.1:::::
Description
hypothetical protein
Coordinates
chr7:+:7835992..7839290
Molecular Weight (calculated)
31912.0 Da
IEP (calculated)
6.159
GRAVY (calculated)
0.050
Length
288 amino acids
Sequence
(BLAST)
001: MTSPSPVSHP RCGMEKKMRT MTDVDETLSG RDWSELPQDA LMSILGKFGA LEILMGAGAV CHSWLEAAKV PNLWRSVDMT QHELLDVLDD QGRYTCDRKI
101: LQTNFEVLCA MARVAVDRSG GQLEAFHGKL FVNDELLKYI ADRSPALKTL SIISCDGVSS QGFTHLIAKC PMLEDLKLVE CINLRRRETY QAIAKACAQL
201: KRFTLCNLPT LEFLLSRSSG EEADGVVAMH ELRSLTLTNC NVTNNYLAAI LDGCPHLEVL DLRLCIVIDI DPTLMARCAA IKSLRLPA
Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.