Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063662 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | PGSC0003DMT400063662 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g013820.2.1 | Tomato | cytosol | 92.48 | 76.08 |
| PGSC0003DMT400015030 | Potato | cytosol | 60.78 | 62.84 |
| PGSC0003DMT400054358 | Potato | cytosol | 53.92 | 48.67 |
| PGSC0003DMT400058969 | Potato | cytosol | 13.4 | 46.07 |
| CDY21988 | Canola | cytosol | 22.55 | 45.7 |
| PGSC0003DMT400090939 | Potato | cytosol | 44.44 | 44.88 |
| AT4G05497.1 | Thale cress | plastid | 34.97 | 43.5 |
| AT4G03630.1 | Thale cress | cytosol | 30.39 | 42.27 |
| CDY48578 | Canola | cytosol | 34.64 | 42.23 |
| Bra034230.1-P | Field mustard | cytosol | 36.27 | 42.21 |
| CDX99649 | Canola | cytosol | 32.03 | 42.06 |
| CDY21989 | Canola | cytosol | 11.11 | 41.98 |
| CDX73787 | Canola | cytosol | 34.97 | 41.8 |
| PGSC0003DMT400016134 | Potato | cytosol | 39.22 | 41.38 |
| Bra034229.1-P | Field mustard | cytosol | 37.25 | 41.3 |
| Bra030342.1-P | Field mustard | cytosol | 31.37 | 41.2 |
| CDY15937 | Canola | cytosol | 31.05 | 40.77 |
| PGSC0003DMT400052833 | Potato | cytosol | 36.6 | 40.73 |
| Bra000817.1-P | Field mustard | plastid | 23.86 | 40.56 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 41.83 | 39.88 |
| CDX90789 | Canola | cytosol | 39.22 | 39.87 |
| CDX86473 | Canola | cytosol | 33.33 | 39.84 |
| Bra034226.1-P | Field mustard | cytosol | 37.25 | 39.58 |
| Bra030690.1-P | Field mustard | cytosol | 36.27 | 39.5 |
| CDY15618 | Canola | cytosol | 36.27 | 39.5 |
| CDX77948 | Canola | cytosol | 21.57 | 39.05 |
| CDY21333 | Canola | nucleus, plastid | 37.25 | 38.78 |
| CDY48580 | Canola | cytosol | 38.89 | 38.76 |
| CDY48574 | Canola | cytosol | 37.58 | 38.59 |
| CDY48577 | Canola | cytosol | 35.29 | 38.3 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 32.03 | 37.84 |
| CDY48576 | Canola | cytosol | 36.6 | 37.71 |
| Bra000816.1-P | Field mustard | plastid | 39.87 | 37.54 |
| Bra000723.1-P | Field mustard | cytosol | 18.63 | 37.5 |
| AT4G05460.1 | Thale cress | cytosol | 36.93 | 37.42 |
| CDY62000 | Canola | plastid | 40.2 | 37.39 |
| Bra034228.1-P | Field mustard | cytosol | 36.27 | 37.37 |
| CDY48575 | Canola | plastid | 38.56 | 37.22 |
| CDY09910 | Canola | nucleus | 38.89 | 37.19 |
| AT4G05490.1 | Thale cress | plastid | 37.25 | 37.13 |
| Bra034227.1-P | Field mustard | plastid | 38.56 | 37.11 |
| KRH11147 | Soybean | cytosol | 38.56 | 37.11 |
| KRH21099 | Soybean | cytosol | 37.58 | 36.98 |
| CDY21986 | Canola | cytosol, plastid | 35.95 | 36.67 |
| AT5G52480.1 | Thale cress | cytosol | 28.76 | 36.51 |
| CDY21990 | Canola | cytosol | 22.88 | 36.46 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 35.62 | 35.62 |
| CDY59275 | Canola | plastid | 37.25 | 35.51 |
| AT4G05475.1 | Thale cress | cytosol | 35.29 | 34.95 |
| CDY10283 | Canola | cytosol | 35.62 | 34.71 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 29.41 | 33.71 |
| CDY06267 | Canola | nucleus | 38.24 | 33.62 |
| Bra031582.1-P | Field mustard | nucleus | 37.91 | 33.14 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 17.65 | 32.53 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 31.05 | 32.2 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 21.24 | 32.02 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 20.91 | 31.53 |
| Zm00001d024252_P001 | Maize | cytosol | 27.12 | 31.44 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 26.47 | 31.4 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 17.65 | 31.4 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 31.05 | 31.05 |
| KXG24675 | Sorghum | cytosol | 29.09 | 30.9 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 17.32 | 30.81 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 30.72 | 30.72 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 30.72 | 30.72 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 20.26 | 30.69 |
| Zm00001d010914_P001 | Maize | cytosol | 32.68 | 30.58 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 20.26 | 30.54 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 32.03 | 30.25 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 30.39 | 30.19 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 32.35 | 30.18 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 32.35 | 30.18 |
| Os02t0317300-01 | Rice | cytosol | 32.03 | 29.88 |
| EES17669 | Sorghum | cytosol | 32.35 | 29.82 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 19.93 | 29.76 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 30.07 | 29.68 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 29.74 | 29.55 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 31.7 | 29.39 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 29.41 | 28.94 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 29.74 | 28.8 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 32.35 | 28.61 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 9.8 | 28.57 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 29.09 | 28.43 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 19.28 | 28.37 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 31.37 | 28.32 |
| Os02t0317500-01 | Rice | cytosol | 30.39 | 28.18 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 27.45 | 27.91 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 26.47 | 27.84 |
| Os08t0193200-00 | Rice | cytosol | 10.46 | 27.83 |
| Zm00001d046526_P001 | Maize | plastid | 25.49 | 27.56 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 28.1 | 27.48 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 31.05 | 27.46 |
| Os08t0194350-00 | Rice | cytosol | 23.86 | 27.44 |
| Zm00001d024265_P001 | Maize | cytosol | 26.8 | 27.33 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 19.93 | 27.23 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 30.72 | 27.17 |
| EES14679 | Sorghum | nucleus | 30.39 | 27.03 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 27.12 | 26.86 |
| TraesCS2D01G159000.1 | Wheat | plastid | 27.12 | 26.86 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 26.47 | 26.82 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 25.49 | 26.8 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 30.07 | 26.67 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 8.5 | 26.26 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 27.78 | 26.23 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 18.95 | 26.13 |
| Zm00001d024764_P001 | Maize | cytosol | 30.39 | 26.05 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 27.45 | 26.01 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 18.95 | 25.89 |
| TraesCS2B01G178700.1 | Wheat | plastid | 26.14 | 25.89 |
| Os11t0637300-00 | Rice | cytosol | 10.13 | 25.83 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 28.76 | 25.81 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 26.8 | 25.62 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 29.09 | 25.43 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 9.8 | 25.42 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 28.1 | 25.37 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 26.8 | 25.31 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 28.76 | 25.14 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 28.76 | 25.14 |
| TraesCS6B01G067700.1 | Wheat | plastid | 21.9 | 25.0 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 26.14 | 24.92 |
| OQU80176 | Sorghum | mitochondrion | 17.97 | 24.66 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 11.44 | 24.65 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 28.1 | 24.36 |
| KXG24670 | Sorghum | cytosol | 25.16 | 24.29 |
| Os08t0193900-01 | Rice | nucleus | 31.37 | 24.24 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 25.16 | 24.21 |
| OQU80048 | Sorghum | cytosol | 22.55 | 24.21 |
| Os08t0193500-00 | Rice | cytosol | 17.32 | 24.2 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 18.3 | 24.03 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 27.45 | 24.0 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 15.03 | 23.83 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 27.45 | 23.73 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 25.49 | 23.28 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 26.47 | 23.28 |
| HORVU2Hr1G077990.2 | Barley | plastid | 28.43 | 23.26 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 26.14 | 23.19 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 25.82 | 23.17 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 21.24 | 23.13 |
| TraesCS7D01G203600.1 | Wheat | plastid | 25.49 | 22.87 |
| TraesCS7D01G203500.1 | Wheat | plastid | 25.16 | 22.65 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 7.84 | 22.64 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 25.16 | 22.38 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 23.86 | 22.12 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 15.36 | 22.07 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 31.05 | 21.99 |
| CDY21983 | Canola | cytosol | 19.93 | 21.55 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 24.18 | 21.51 |
| OQU80174 | Sorghum | cytosol | 9.15 | 20.9 |
| Bra034194.1-P | Field mustard | cytosol | 36.27 | 20.75 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 16.34 | 20.58 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 31.37 | 20.43 |
| Os08t0193300-00 | Rice | cytosol | 22.22 | 20.42 |
| TraesCS6B01G310200.1 | Wheat | plastid | 23.86 | 20.22 |
| TraesCS6A01G051000.1 | Wheat | plastid | 24.51 | 20.16 |
| Bra020205.1-P | Field mustard | plastid | 37.25 | 20.11 |
| CDY09154 | Canola | plastid | 37.25 | 20.11 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 17.65 | 20.0 |
| CDY22112 | Canola | cytosol | 31.37 | 19.92 |
| Os08t0191300-00 | Rice | cytosol, golgi | 16.01 | 19.07 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 18.63 | 19.06 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 24.51 | 18.94 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 29.09 | 18.78 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 17.65 | 17.88 |
| TraesCS3B01G452300.1 | Wheat | plastid | 27.12 | 17.85 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 27.12 | 17.73 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 25.16 | 17.58 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 27.12 | 17.55 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 25.16 | 17.3 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 14.05 | 17.2 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 27.12 | 16.73 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 20.26 | 16.71 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 20.91 | 16.37 |
| Os08t0196200-01 | Rice | cytosol | 7.19 | 8.03 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 0.65 | 0.53 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:102599722 | Gene3D:3.80.10.10 | MapMan:35.1 | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt | UniProt:M1A5A9 | PFAM:PF12937 | PFAM:PF13516 | EnsemblPlantsGene:PGSC0003DMG400005868 | PGSC:PGSC0003DMG400005868 |
| EnsemblPlants:PGSC0003DMT400015035 | PFscan:PS50181 | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF5 | SUPFAM:SSF52047 | UniParc:UPI0002958F7F |
| RefSeq:XP_006352210.1 | SEG:seg | : | : | : | : |
Description
Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400005868]
Coordinates
chr8:-:5747059..5751307
Molecular Weight (calculated)
35183.5 Da
IEP (calculated)
8.318
GRAVY (calculated)
-0.302
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MPNAEKKLEA SSTGPPPPSP PWVELPAEIT MDILKRLGTI EILESAQRVC STWRKVCHDP AMWRVIDLKR FVFRSKVAKV LEKICRLAVR RSQGQLFKIS
101: IENFGNERLL SYIASRSSQL RHLRLVKCYN RLSGGLASAA KNFPFLEELH IYFTSITKDD IEIVGRSCRL LKSFVLHAGP FDKVRTPPSQ DNDKAVAIAR
201: CMPGLRHLAL IENNLTNEGL QAILDGCPHL ESLDLRCCCF IDLEGDLGRR CSQQIVDLKQ PRDSTCDYEF DCKIRHYRSF EDYCRSRFSN YNPFIVGDIH
301: EYDYYF
101: IENFGNERLL SYIASRSSQL RHLRLVKCYN RLSGGLASAA KNFPFLEELH IYFTSITKDD IEIVGRSCRL LKSFVLHAGP FDKVRTPPSQ DNDKAVAIAR
201: CMPGLRHLAL IENNLTNEGL QAILDGCPHL ESLDLRCCCF IDLEGDLGRR CSQQIVDLKQ PRDSTCDYEF DCKIRHYRSF EDYCRSRFSN YNPFIVGDIH
301: EYDYYF
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.