Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G444000.1 | Wheat | nucleus | 84.64 | 83.43 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 61.74 | 82.56 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 74.78 | 74.57 |
| EES14679 | Sorghum | nucleus | 63.77 | 63.95 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 50.14 | 53.56 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 44.93 | 49.52 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 42.61 | 48.04 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 40.29 | 47.12 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 42.03 | 47.08 |
| Bra000817.1-P | Field mustard | plastid | 22.61 | 43.33 |
| Bra030342.1-P | Field mustard | cytosol | 27.25 | 40.34 |
| CDX99649 | Canola | cytosol | 27.25 | 40.34 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 12.17 | 40.0 |
| CDY15937 | Canola | cytosol | 26.96 | 39.91 |
| AT4G05460.1 | Thale cress | cytosol | 34.49 | 39.4 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 37.39 | 39.09 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 19.42 | 38.95 |
| TraesCS6B01G067700.1 | Wheat | plastid | 30.14 | 38.81 |
| AT4G03630.1 | Thale cress | cytosol | 24.64 | 38.64 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 18.55 | 38.55 |
| CDY21989 | Canola | cytosol | 8.99 | 38.27 |
| CDY48580 | Canola | cytosol | 33.91 | 38.11 |
| CDY21333 | Canola | nucleus, plastid | 32.46 | 38.1 |
| CDY48574 | Canola | cytosol | 32.75 | 37.92 |
| Bra034227.1-P | Field mustard | plastid | 34.78 | 37.74 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 22.03 | 37.44 |
| CDY48575 | Canola | plastid | 34.2 | 37.22 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 34.49 | 37.19 |
| CDY48578 | Canola | cytosol | 26.96 | 37.05 |
| Bra034229.1-P | Field mustard | cytosol | 29.57 | 36.96 |
| Bra034230.1-P | Field mustard | cytosol | 28.12 | 36.88 |
| Bra034226.1-P | Field mustard | cytosol | 30.72 | 36.81 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 34.2 | 36.76 |
| CDY48576 | Canola | cytosol | 31.59 | 36.7 |
| TraesCS6B01G310200.1 | Wheat | plastid | 38.26 | 36.57 |
| CDX90789 | Canola | cytosol | 31.88 | 36.54 |
| CDY59275 | Canola | plastid | 33.91 | 36.45 |
| CDY21988 | Canola | cytosol | 15.94 | 36.42 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 34.2 | 36.42 |
| Bra034228.1-P | Field mustard | cytosol | 31.01 | 36.03 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 21.16 | 35.61 |
| TraesCS2B01G178700.1 | Wheat | plastid | 31.88 | 35.6 |
| CDY15618 | Canola | cytosol | 28.99 | 35.59 |
| Bra030690.1-P | Field mustard | cytosol | 28.99 | 35.59 |
| AT4G05490.1 | Thale cress | plastid | 31.59 | 35.5 |
| Bra000816.1-P | Field mustard | plastid | 33.33 | 35.38 |
| CDY62000 | Canola | plastid | 33.62 | 35.26 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 26.38 | 35.14 |
| CDY10283 | Canola | cytosol | 31.88 | 35.03 |
| CDY21986 | Canola | cytosol, plastid | 30.43 | 35.0 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 22.61 | 34.82 |
| CDX86473 | Canola | cytosol | 25.8 | 34.77 |
| CDX73787 | Canola | cytosol | 25.8 | 34.77 |
| CDY48577 | Canola | cytosol | 28.12 | 34.4 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 34.2 | 34.2 |
| KRH21099 | Soybean | cytosol | 30.72 | 34.08 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 34.49 | 34.0 |
| AT4G05497.1 | Thale cress | plastid | 24.06 | 33.74 |
| CDX77948 | Canola | cytosol | 16.52 | 33.73 |
| CDY09910 | Canola | nucleus | 31.01 | 33.44 |
| PGSC0003DMT400016134 | Potato | cytosol | 27.54 | 32.76 |
| KRH11147 | Soybean | cytosol | 30.14 | 32.7 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 19.71 | 32.69 |
| PGSC0003DMT400058969 | Potato | cytosol | 8.41 | 32.58 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 22.9 | 32.51 |
| PGSC0003DMT400052833 | Potato | cytosol | 25.8 | 32.36 |
| Solyc08g013800.2.1 | Tomato | cytosol | 27.54 | 32.31 |
| AT4G05475.1 | Thale cress | cytosol | 28.7 | 32.04 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 29.57 | 31.78 |
| Bra000723.1-P | Field mustard | cytosol | 13.91 | 31.58 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 27.83 | 31.37 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 20.29 | 31.25 |
| CDY06267 | Canola | nucleus | 31.3 | 31.03 |
| Solyc08g013780.1.1 | Tomato | cytosol | 11.01 | 30.89 |
| Bra031582.1-P | Field mustard | nucleus | 31.01 | 30.57 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 17.1 | 30.57 |
| Solyc08g006940.2.1 | Tomato | cytosol | 27.54 | 30.55 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 28.99 | 30.3 |
| PGSC0003DMT400015035 | Potato | cytosol | 26.67 | 30.07 |
| PGSC0003DMT400090939 | Potato | cytosol | 26.38 | 30.03 |
| AT5G52480.1 | Thale cress | cytosol | 20.87 | 29.88 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 28.99 | 29.07 |
| PGSC0003DMT400015030 | Potato | cytosol | 23.19 | 27.03 |
| PGSC0003DMT400054358 | Potato | cytosol | 26.38 | 26.84 |
| CDY21990 | Canola | cytosol | 14.78 | 26.56 |
| CDY21983 | Canola | cytosol | 21.74 | 26.5 |
| TraesCS3B01G452300.1 | Wheat | plastid | 33.62 | 24.95 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 33.62 | 24.52 |
| Solyc08g013820.2.1 | Tomato | cytosol | 26.38 | 24.46 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 31.3 | 24.27 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 18.84 | 21.45 |
| CDY09154 | Canola | plastid | 33.91 | 20.63 |
| Bra020205.1-P | Field mustard | plastid | 33.91 | 20.63 |
| Bra034194.1-P | Field mustard | cytosol | 31.59 | 20.37 |
| CDY22112 | Canola | cytosol | 26.67 | 19.09 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF12937 | PFAM:PF13516 | PFscan:PS50181 | PANTHER:PTHR44078 |
| PANTHER:PTHR44078:SF3 | SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | EnsemblPlantsGene:TraesCS3B01G443800 | EnsemblPlants:TraesCS3B01G443800.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:684248615..684250985
Molecular Weight (calculated)
39108.9 Da
IEP (calculated)
4.532
GRAVY (calculated)
-0.473
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSSSSSRRR RDGRRGRHPP TAPVPAEETR NWAELPLDAI SAILHKLDHV DILMGPSQVC RSWRGAARDE PELWRRINML GHADLEHELN FPGMAQAAVR
101: RSAGRCEAFW GEYACDHDLL LYLADQASSL KSLRLISCYN FEDEGLQEAI VKFPLLEELE LSLCANVGES GVFGVVGRAC PQLKRFRLSK DVFYDFEASG
201: YDKDDEALGI ATMHELRSLQ LFGNCLTNKG LTAILDNCRH LESLDIRHCF NVNMDDALRA KCGRISTVRL PNDSTDDYDF EVQEPVWADS GSFLGDYMGS
301: GSDYELDSED YDDYCDPSRY LDGVYEDELN EEDRMLLRGM HMLMK
101: RSAGRCEAFW GEYACDHDLL LYLADQASSL KSLRLISCYN FEDEGLQEAI VKFPLLEELE LSLCANVGES GVFGVVGRAC PQLKRFRLSK DVFYDFEASG
201: YDKDDEALGI ATMHELRSLQ LFGNCLTNKG LTAILDNCRH LESLDIRHCF NVNMDDALRA KCGRISTVRL PNDSTDDYDF EVQEPVWADS GSFLGDYMGS
301: GSDYELDSED YDDYCDPSRY LDGVYEDELN EEDRMLLRGM HMLMK
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.