Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 69.98 | 95.11 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 86.26 | 86.08 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 56.03 | 80.3 |
| TraesCS3B01G452300.1 | Wheat | plastid | 76.53 | 77.85 |
| Os08t0193200-00 | Rice | cytosol | 17.55 | 72.17 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 65.96 | 70.11 |
| KXG24670 | Sorghum | cytosol | 40.38 | 60.25 |
| Os08t0193500-00 | Rice | cytosol | 26.64 | 57.53 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 12.69 | 57.14 |
| Os08t0193300-00 | Rice | cytosol | 30.66 | 43.54 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 18.82 | 43.41 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 15.22 | 43.37 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 15.43 | 42.44 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 18.18 | 42.36 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 21.35 | 39.15 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 17.12 | 38.94 |
| PGSC0003DMT400058969 | Potato | cytosol | 6.98 | 37.08 |
| TraesCS2B01G178700.1 | Wheat | plastid | 23.68 | 36.25 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 17.12 | 36.16 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 16.49 | 34.82 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 14.16 | 34.72 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 25.16 | 34.0 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 24.52 | 33.62 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 24.31 | 33.43 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 24.31 | 33.24 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 20.72 | 33.22 |
| CDY21988 | Canola | cytosol | 10.57 | 33.11 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 21.35 | 33.01 |
| CDX73787 | Canola | cytosol | 17.76 | 32.81 |
| KRH21099 | Soybean | cytosol | 21.56 | 32.8 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 22.2 | 32.71 |
| Bra034230.1-P | Field mustard | cytosol | 18.18 | 32.7 |
| CDY48578 | Canola | cytosol | 17.34 | 32.67 |
| CDY21989 | Canola | cytosol | 5.5 | 32.1 |
| Bra034227.1-P | Field mustard | plastid | 21.56 | 32.08 |
| CDY48575 | Canola | plastid | 21.35 | 31.86 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 20.72 | 31.82 |
| AT4G05460.1 | Thale cress | cytosol | 20.3 | 31.79 |
| KRH11147 | Soybean | cytosol | 21.35 | 31.76 |
| CDX99649 | Canola | cytosol | 15.64 | 31.76 |
| CDY48580 | Canola | cytosol | 20.3 | 31.27 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 21.56 | 30.91 |
| AT4G03630.1 | Thale cress | cytosol | 14.38 | 30.91 |
| CDY15937 | Canola | cytosol | 15.22 | 30.9 |
| Bra030342.1-P | Field mustard | cytosol | 15.22 | 30.9 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 20.3 | 30.67 |
| PGSC0003DMT400016134 | Potato | cytosol | 18.6 | 30.34 |
| CDY15618 | Canola | cytosol | 17.97 | 30.25 |
| Bra030690.1-P | Field mustard | cytosol | 17.97 | 30.25 |
| CDX90789 | Canola | cytosol | 19.24 | 30.23 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 16.49 | 30.12 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 20.3 | 30.0 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 20.51 | 29.94 |
| CDY21333 | Canola | nucleus, plastid | 18.6 | 29.93 |
| AT5G52480.1 | Thale cress | cytosol | 15.22 | 29.88 |
| Bra034229.1-P | Field mustard | cytosol | 17.34 | 29.71 |
| CDX86473 | Canola | cytosol | 16.07 | 29.69 |
| AT4G05490.1 | Thale cress | plastid | 19.24 | 29.64 |
| CDX77948 | Canola | cytosol | 10.57 | 29.59 |
| CDY48574 | Canola | cytosol | 18.6 | 29.53 |
| PGSC0003DMT400052833 | Potato | cytosol | 17.12 | 29.45 |
| Bra000817.1-P | Field mustard | plastid | 11.21 | 29.44 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 20.08 | 29.41 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 19.87 | 29.28 |
| Bra000816.1-P | Field mustard | plastid | 19.87 | 28.92 |
| AT4G05497.1 | Thale cress | plastid | 15.01 | 28.86 |
| CDY48576 | Canola | cytosol | 17.97 | 28.62 |
| Bra034226.1-P | Field mustard | cytosol | 17.34 | 28.47 |
| Solyc08g006940.2.1 | Tomato | cytosol | 18.6 | 28.3 |
| AT4G05475.1 | Thale cress | cytosol | 18.39 | 28.16 |
| CDY21986 | Canola | cytosol, plastid | 17.76 | 28.0 |
| CDY09910 | Canola | nucleus | 18.82 | 27.81 |
| PGSC0003DMT400090939 | Potato | cytosol | 17.76 | 27.72 |
| CDY62000 | Canola | plastid | 19.24 | 27.66 |
| Bra034228.1-P | Field mustard | cytosol | 17.34 | 27.61 |
| CDY48577 | Canola | cytosol | 16.28 | 27.3 |
| PGSC0003DMT400015035 | Potato | cytosol | 17.55 | 27.12 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 17.55 | 27.12 |
| Solyc08g013780.1.1 | Tomato | cytosol | 6.98 | 26.83 |
| CDY06267 | Canola | nucleus | 19.66 | 26.72 |
| CDY59275 | Canola | plastid | 17.97 | 26.48 |
| CDY10283 | Canola | cytosol | 17.55 | 26.43 |
| Bra000723.1-P | Field mustard | cytosol | 8.46 | 26.32 |
| Bra031582.1-P | Field mustard | nucleus | 19.45 | 26.29 |
| Solyc08g013800.2.1 | Tomato | cytosol | 16.28 | 26.19 |
| TraesCS6B01G067700.1 | Wheat | plastid | 14.8 | 26.12 |
| PGSC0003DMT400015030 | Potato | cytosol | 15.64 | 25.0 |
| TraesCS6B01G310200.1 | Wheat | plastid | 19.03 | 24.93 |
| PGSC0003DMT400054358 | Potato | cytosol | 17.12 | 23.89 |
| CDY21990 | Canola | cytosol | 9.51 | 23.44 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 17.34 | 23.43 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 16.49 | 22.61 |
| Solyc08g013820.2.1 | Tomato | cytosol | 17.76 | 22.58 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 10.15 | 19.75 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 12.05 | 18.81 |
| CDY21983 | Canola | cytosol | 11.21 | 18.73 |
| Bra034194.1-P | Field mustard | cytosol | 18.18 | 16.07 |
| CDY22112 | Canola | cytosol | 16.07 | 15.77 |
| Bra020205.1-P | Field mustard | plastid | 17.97 | 14.99 |
| CDY09154 | Canola | plastid | 17.97 | 14.99 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G452500.1 | EnsemblPlantsGene:TraesCS3B01G452500 | Gene3D:1.10.20.10 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046982 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:Histone-fold |
| InterPro:IPR001810 | InterPro:IPR009072 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44078 | PFAM:PF12937 |
| SEG:seg | SUPFAM:SSF47113 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr3B:-:693644416..693649806
Molecular Weight (calculated)
53807.0 Da
IEP (calculated)
4.465
GRAVY (calculated)
-0.381
Length
473 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGPPASPSG DGGIGDGRDV FVPVAGITRI MGKVILPDGK IDEGAVRELA SEFITRRASS ESDRCKRAKR EAMTVDDLLS EMAKQGFQDH IEPLKACLHK
101: YRVELPCTME VEPNPLPISD VRDWSELPLD ALSAIFMKLG TIEILMGAGL VCRSWLVTAK SPELWRFVDM TRHKVVFSKA ENVMCKMAKV AIDRSDGRME
201: SFWAQKFVTS ELLNYIASRC NSLKSIRLIG AYYFWDDENV IIKLAAKCPM LEEIEYSDQK QSWSFFTAIG AARPELKRLR VRLPWFDSDS IEREMRMEQR
301: NGDDEDEEEE EEESDEAWEA IHNEEAFAIA ESLHELRLLQ MAGYGLTNKG VYAILEGCPH LEFLDLRECL HIIVNAELRA RCANIRHVRL PGREPYVRCP
401: EIQTIEADEG QVIEMAGLYE TEARSVHNEP AMGNDDYGEN YCDCWDDYSL PSSPDSPALP MYSMDDPRYY WEL
101: YRVELPCTME VEPNPLPISD VRDWSELPLD ALSAIFMKLG TIEILMGAGL VCRSWLVTAK SPELWRFVDM TRHKVVFSKA ENVMCKMAKV AIDRSDGRME
201: SFWAQKFVTS ELLNYIASRC NSLKSIRLIG AYYFWDDENV IIKLAAKCPM LEEIEYSDQK QSWSFFTAIG AARPELKRLR VRLPWFDSDS IEREMRMEQR
301: NGDDEDEEEE EEESDEAWEA IHNEEAFAIA ESLHELRLLQ MAGYGLTNKG VYAILEGCPH LEFLDLRECL HIIVNAELRA RCANIRHVRL PGREPYVRCP
401: EIQTIEADEG QVIEMAGLYE TEARSVHNEP AMGNDDYGEN YCDCWDDYSL PSSPDSPALP MYSMDDPRYY WEL
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.