Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G457400.1 | Wheat | cytosol | 97.33 | 97.33 |
| TraesCS3D01G450200.1 | Wheat | cytosol | 96.67 | 96.67 |
| HORVU3Hr1G098530.4 | Barley | cytosol | 92.67 | 92.36 |
| Os01t0935300-02 | Rice | cytosol | 70.0 | 70.0 |
| EES04173 | Sorghum | cytosol | 61.0 | 63.99 |
| Zm00001d042193_P001 | Maize | cytosol | 61.67 | 63.36 |
| Solyc01g099290.2.1 | Tomato | cytosol | 23.33 | 26.32 |
| PGSC0003DMT400063662 | Potato | cytosol | 24.67 | 25.52 |
| AT1G59790.1 | Thale cress | cytosol | 25.67 | 20.59 |
| TraesCS1B01G117900.1 | Wheat | cytosol | 31.33 | 12.6 |
| AT4G02570.1 | Thale cress | cytosol | 30.67 | 12.47 |
| CDY18013 | Canola | cytosol | 30.67 | 12.47 |
| CDX90932 | Canola | cytosol | 30.67 | 12.47 |
| Bra000874.1-P | Field mustard | cytosol | 30.67 | 12.47 |
| CDY22060 | Canola | cytosol | 30.33 | 12.33 |
| CDY21896 | Canola | cytosol | 30.33 | 12.33 |
| TraesCS1B01G118000.1 | Wheat | cytosol | 29.67 | 11.96 |
| KRH68142 | Soybean | cytosol | 29.0 | 11.74 |
| KRG96405 | Soybean | cytosol | 28.33 | 11.52 |
| TraesCS3B01G044500.1 | Wheat | cytosol | 27.33 | 11.05 |
| GSMUA_Achr9P17620_001 | Banana | cytosol | 26.0 | 10.58 |
| Bra036257.1-P | Field mustard | cytosol, nucleus, peroxisome | 30.0 | 9.13 |
| TraesCS6B01G335200.1 | Wheat | cytosol | 21.33 | 8.7 |
| TraesCS2B01G550000.1 | Wheat | cytosol | 18.67 | 7.65 |
| TraesCS5B01G427400.1 | Wheat | cytosol | 16.33 | 6.1 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G497300.1 | EnsemblPlantsGene:TraesCS3B01G497300 | Gene3D:1.20.1310.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0031625 | InterPro:Cullin_N | InterPro:Cullin_repeat-like_dom_sf | PANTHER:PTHR11932 | PANTHER:PTHR11932:SF83 | PFAM:PF00888 |
| SEG:seg | SUPFAM:SSF74788 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3B:+:741301171..741303775
Molecular Weight (calculated)
34258.1 Da
IEP (calculated)
4.933
GRAVY (calculated)
-0.174
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MNVHLSFEDG WKVLEQGIVT CSKILEGSTG TRPTVAEYMN CYDCAYRMAV QTTSYCEEMY NGYKATLAES VRALVCPHLM HKRDGYLLRQ LANMWSNYCI
101: MVKCVSGFFN YLDRCFVEQR KLPCLEDTAA TSFFSTVFSF FSHEVSDALL TSILQERDGG NADMDILMGI MRGICRSEVK SFIKNAVVQD TYAYYSRKSS
201: EWIVQYPLQD YLAKVQDCME KETMRLMHYL CISEGDSTEL CLKVVSAPLM QTYDSYAREK QIGGQLLLQT YKTVEDDLLA RCNRLTIDSG VDNSSGSYME
101: MVKCVSGFFN YLDRCFVEQR KLPCLEDTAA TSFFSTVFSF FSHEVSDALL TSILQERDGG NADMDILMGI MRGICRSEVK SFIKNAVVQD TYAYYSRKSS
201: EWIVQYPLQD YLAKVQDCME KETMRLMHYL CISEGDSTEL CLKVVSAPLM QTYDSYAREK QIGGQLLLQT YKTVEDDLLA RCNRLTIDSG VDNSSGSYME
001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA
Arabidopsis Description
CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.