Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 71.48 | 86.17 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 84.59 | 81.9 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 74.1 | 80.43 |
| Os03t0633500-01 | Rice | cytosol | 49.51 | 64.81 |
| VIT_14s0081g00010.t01 | Wine grape | nucleus, plastid | 34.1 | 61.18 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 52.79 | 60.98 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 50.49 | 60.87 |
| GSMUA_Achr10P... | Banana | nucleus | 45.9 | 58.09 |
| Solyc06g008590.2.1 | Tomato | nucleus | 38.69 | 56.73 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 45.25 | 56.56 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 44.92 | 56.38 |
| PGSC0003DMT400013627 | Potato | nucleus | 39.34 | 56.07 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 43.93 | 55.6 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 44.92 | 55.24 |
| PGSC0003DMT400041976 | Potato | nucleus | 38.03 | 54.46 |
| AT3G04730.1 | Thale cress | cytosol, nucleus, plastid | 41.97 | 54.24 |
| Bra040122.1-P | Field mustard | nucleus | 40.0 | 54.22 |
| VIT_07s0141g00290.t01 | Wine grape | cytosol, nucleus, plastid | 42.3 | 54.2 |
| Solyc06g053830.2.1 | Tomato | nucleus | 38.69 | 54.13 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 40.98 | 54.11 |
| KRG92683 | Soybean | nucleus | 40.0 | 53.74 |
| Bra040398.1-P | Field mustard | nucleus | 40.66 | 53.68 |
| KRH34377 | Soybean | nucleus | 41.97 | 53.56 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 42.62 | 53.5 |
| KRH67289 | Soybean | nucleus | 44.26 | 53.15 |
| CDY10694 | Canola | mitochondrion | 30.16 | 52.87 |
| KRG95616 | Soybean | nucleus | 43.61 | 52.78 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 40.66 | 52.54 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 43.28 | 52.17 |
| Solyc09g083290.2.1 | Tomato | nucleus | 40.0 | 51.69 |
| KRH32099 | Soybean | nucleus | 41.97 | 51.61 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 40.0 | 51.48 |
| KRG96977 | Soybean | nucleus | 38.69 | 51.3 |
| PGSC0003DMT400015610 | Potato | nucleus | 40.0 | 51.26 |
| TraesCS5A01G382600.1 | Wheat | nucleus | 39.02 | 51.07 |
| KRH68738 | Soybean | nucleus | 40.66 | 51.03 |
| AT4G14550.2 | Thale cress | nucleus | 38.69 | 50.43 |
| PGSC0003DMT400050101 | Potato | cytosol, nucleus, plastid | 40.98 | 50.2 |
| Solyc01g097290.2.1 | Tomato | nucleus | 40.98 | 49.8 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 38.69 | 49.79 |
| Bra001900.1-P | Field mustard | cytosol, nucleus, plastid | 38.69 | 49.79 |
| Bra030560.1-P | Field mustard | nucleus | 37.38 | 49.78 |
| CDX89832 | Canola | nucleus | 36.39 | 49.55 |
| CDY18214 | Canola | nucleus | 36.39 | 49.55 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 37.05 | 49.34 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 37.05 | 49.34 |
| Bra033886.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 39.02 | 49.17 |
| Bra015298.1-P | Field mustard | nucleus | 36.07 | 49.11 |
| Bra039855.1-P | Field mustard | nucleus | 37.38 | 48.93 |
| KRH34091 | Soybean | cytosol, nucleus, plastid | 37.05 | 48.92 |
| Bra032520.1-P | Field mustard | nucleus | 36.39 | 48.9 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 36.39 | 48.68 |
| CDY32537 | Canola | nucleus | 36.39 | 48.68 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 38.69 | 48.56 |
| CDY47148 | Canola | nucleus | 37.05 | 48.5 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 39.02 | 48.37 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 36.39 | 47.64 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 37.38 | 47.5 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 37.38 | 47.5 |
| KRH71337 | Soybean | nucleus | 26.23 | 47.06 |
| TraesCS7A01G371500.1 | Wheat | cytosol, nucleus, plastid | 27.21 | 45.86 |
| Zm00001d041416_P001 | Maize | nucleus | 51.15 | 45.35 |
| CDY50750 | Canola | nucleus, plastid | 41.31 | 43.3 |
| TraesCS3A01G121300.2 | Wheat | nucleus | 28.52 | 43.07 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 42.95 | 39.58 |
| TraesCS5A01G058700.1 | Wheat | cytosol | 27.54 | 39.25 |
| TraesCS7A01G331100.1 | Wheat | nucleus | 30.16 | 38.33 |
| TraesCS1A01G118400.2 | Wheat | cytosol | 24.92 | 37.44 |
| TraesCS5A01G378200.1 | Wheat | nucleus | 25.9 | 37.26 |
| TraesCS3A01G155200.1 | Wheat | cytosol | 28.52 | 35.51 |
| TraesCS1A01G390200.1 | Wheat | plastid | 29.51 | 34.48 |
| TraesCS3A01G270000.1 | Wheat | nucleus, plastid | 26.89 | 31.42 |
| CDY63072 | Canola | nucleus | 38.36 | 29.4 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS5A01G378300 | EnsemblPlants:TraesCS5A01G378300.2 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5A:+:575657412..575659103
Molecular Weight (calculated)
33355.1 Da
IEP (calculated)
4.949
GRAVY (calculated)
-0.209
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGLGFEETE LRLGLPGGGN EAEEAAAAVR SSGKRGYAET IDLVLKLEPA SAAAPPSGDD EEVADGVAEA QPPSPAAVDG QLKRSPSQSS VVTTAQPDAD
101: PEKPRAPKAQ AVGWPPVRSF RRNMLAAALV KVSMDGAPYL RKVDMGTYKS YQELERMFSS FTIGNTPTQG MTGMNESKLV DLLSGSDYVP TYQDKDGDWM
201: LVGDVPWEMF VASCKRLRIM KGSEAIGLGR CPLNFQIYVC MLDGRLLTPF VLRFFSAKGN GEMQEQELID VVSIPRLRLC LPPLCTIIYY CYFATIRSKF
301: RYRLD
101: PEKPRAPKAQ AVGWPPVRSF RRNMLAAALV KVSMDGAPYL RKVDMGTYKS YQELERMFSS FTIGNTPTQG MTGMNESKLV DLLSGSDYVP TYQDKDGDWM
201: LVGDVPWEMF VASCKRLRIM KGSEAIGLGR CPLNFQIYVC MLDGRLLTPF VLRFFSAKGN GEMQEQELID VVSIPRLRLC LPPLCTIIYY CYFATIRSKF
301: RYRLD
001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Arabidopsis Description
IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.