Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX67912 | nucleus |
| CDX68112 | |
| CDX71968 | |
| CDX73212 | |
| CDX76680 | nucleus |
| CDX80168 | |
| CDX80545 | |
| CDX80590 | |
| CDX85931 | |
| CDX87072 | |
| CDX87307 | |
| CDX87650 | |
| CDX87863 | |
| CDX88204 | |
| CDX89163 | nucleus |
| CDX89832 | |
| CDX90899 | |
| CDX90932 | |
| CDY03088 | |
| CDY06836 | |
| CDY10068 | |
| CDY11468 | nucleus |
| CDY13521 | |
| CDY15493 | |
| CDY16034 | |
| CDY17621 | |
| CDY18013 | |
| CDY18214 | |
| CDY19790 | |
| CDY21068 | |
| CDY21896 | |
| CDY21947 | |
| CDY22060 | |
| CDY22108 | |
| CDY22876 | |
| CDY25909 | |
| CDY26594 | |
| CDY27511 | |
| CDY28523 | |
| CDY31282 | |
| CDY31545 | |
| CDY32537 | |
| CDY33844 | |
| CDY34211 | |
| CDY38297 | |
| CDY39073 | |
| CDY39982 | |
| CDY46538 | |
| CDY47946 | |
| CDY48005 | |
| CDY53439 | |
| CDY53774 | |
| CDY53998 | nucleus |
| CDY61501 | |
| CDY63072 | |
| CDY68868 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001900.1-P | Field mustard | cytosol, nucleus, plastid | 100.0 | 100.0 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 90.3 | 88.07 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 87.34 | 86.25 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 87.34 | 86.25 |
| CDY10694 | Canola | mitochondrion | 62.87 | 85.63 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 87.34 | 84.15 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 76.37 | 77.68 |
| CDY47148 | Canola | nucleus | 75.95 | 77.25 |
| KRH34377 | Soybean | nucleus | 75.53 | 74.9 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 73.0 | 71.19 |
| Solyc09g083290.2.1 | Tomato | nucleus | 68.78 | 69.07 |
| PGSC0003DMT400015610 | Potato | nucleus | 68.35 | 68.07 |
| CDY32537 | Canola | nucleus | 65.4 | 67.98 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 64.98 | 67.54 |
| CDX89832 | Canola | nucleus | 62.87 | 66.52 |
| CDY18214 | Canola | nucleus | 61.6 | 65.18 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 62.87 | 65.07 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 62.03 | 63.64 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 62.45 | 62.71 |
| GSMUA_Achr10P... | Banana | nucleus | 62.45 | 61.41 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 60.76 | 60.76 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 62.03 | 60.25 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 60.34 | 58.85 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 58.65 | 57.68 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 60.34 | 57.66 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 61.18 | 57.54 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 61.18 | 57.54 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 61.18 | 57.31 |
| Os03t0742900-01 | Rice | vacuole | 54.85 | 55.08 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 53.16 | 54.31 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 53.16 | 53.85 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 75.11 | 53.78 |
| TraesCS5A01G382600.1 | Wheat | nucleus | 52.74 | 53.65 |
| EER90896 | Sorghum | nucleus | 52.74 | 53.19 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 42.62 | 52.88 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 42.62 | 52.88 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 52.74 | 52.74 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 61.18 | 52.54 |
| Zm00001d033976_P002 | Maize | nucleus | 52.32 | 52.32 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 55.7 | 52.17 |
| CDX94876 | Canola | nucleus | 37.55 | 52.05 |
| Os03t0633500-01 | Rice | cytosol | 51.05 | 51.93 |
| Zm00001d013302_P002 | Maize | nucleus | 49.79 | 51.75 |
| CDY10692 | Canola | nucleus | 37.55 | 51.74 |
| CDX92972 | Canola | nucleus | 37.13 | 51.46 |
| CDY40837 | Canola | nucleus | 37.13 | 51.46 |
| CDY35493 | Canola | nucleus | 37.13 | 51.46 |
| CDY50750 | Canola | nucleus, plastid | 62.87 | 51.2 |
| CDY10346 | Canola | nucleus | 37.13 | 51.16 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 38.82 | 51.11 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 54.43 | 50.99 |
| EES17334 | Sorghum | cytosol | 60.34 | 50.89 |
| CDY10069 | Canola | nucleus | 39.24 | 50.54 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 39.66 | 50.54 |
| Os12t0601300-01 | Rice | nucleus | 58.65 | 50.18 |
| CDY40881 | Canola | cytosol | 38.4 | 49.73 |
| CDY53305 | Canola | cytosol | 32.91 | 49.68 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 38.82 | 49.46 |
| CDY36883 | Canola | nucleus | 35.44 | 48.84 |
| CDY53735 | Canola | nucleus | 35.02 | 48.26 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 38.82 | 47.42 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 52.32 | 46.97 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 37.97 | 46.39 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 35.02 | 45.86 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 37.13 | 44.67 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 37.13 | 44.67 |
| CDY06836 | Canola | nucleus | 46.84 | 44.05 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 51.9 | 43.77 |
| CDY68807 | Canola | nucleus | 35.02 | 42.35 |
| CDY25617 | Canola | nucleus | 46.84 | 41.73 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 30.38 | 41.62 |
| CDY26042 | Canola | nucleus | 34.18 | 41.33 |
| CDX89499 | Canola | nucleus | 45.99 | 40.22 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 52.74 | 39.68 |
| Zm00001d041416_P001 | Maize | nucleus | 56.96 | 39.24 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 49.79 | 38.69 |
| CDY37837 | Canola | mitochondrion | 48.1 | 38.51 |
| CDY53800 | Canola | nucleus | 29.96 | 37.77 |
| CDY63072 | Canola | nucleus | 63.29 | 37.69 |
| CDY68170 | Canola | nucleus, plastid | 49.37 | 37.62 |
| CDY18679 | Canola | plastid | 48.1 | 36.54 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 48.52 | 34.95 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 48.95 | 34.94 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 39.66 | 34.06 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078E065 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EnsemblPlants:CDX92973 |
| ProteinID:CDX92973 | ProteinID:CDX92973.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00154851001 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF89 | SUPFAM:SSF54277 | UniParc:UPI0002540740 | SEG:seg | : |
Description
BnaA03g36950D
Coordinates
chrLK031874:+:397640..399938
Molecular Weight (calculated)
26157.6 Da
IEP (calculated)
8.569
GRAVY (calculated)
-0.504
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGQLMNLNA TELCLGLPGG TKAVESPAKS SVRNKRGFSE TMDLMLNLQC NKEETVDLNN ATASKEKTLL KDPAKPPAKA QVVGWPPVRN YRKNMMTQQK
101: TSGEEEASSE KAGNGGGAAL VKVSMDGAPY LRKVDLTMYK SYQDLSDALA KMFSSFTMGN YGAQGMIDFM NESKLMNLLN SSEYVPSYED KDGDWMLVGD
201: VPWEMFVQSC KRLRIMKGSE AIGLAPRAME KYCKNRS
101: TSGEEEASSE KAGNGGGAAL VKVSMDGAPY LRKVDLTMYK SYQDLSDALA KMFSSFTMGN YGAQGMIDFM NESKLMNLLN SSEYVPSYED KDGDWMLVGD
201: VPWEMFVQSC KRLRIMKGSE AIGLAPRAME KYCKNRS
001: MIGQLMNLKA TELCLGLPGG AEAVESPAKS AVGSKRGFSE TVDLMLNLQS NKEGSVDLKN VSAVPKEKTT LKDPSKPPAK AQVVGWPPVR NYRKNMMTQQ
101: KTSSGAEEAS SEKAGNFGGG AAGAGLVKVS MDGAPYLRKV DLKMYKSYQD LSDALAKMFS SFTMGNYGAQ GMIDFMNESK LMNLLNSSEY VPSYEDKDGD
201: WMLVGDVPWE MFVESCKRLR IMKGSEAVGL APRAMEKYCK NRS
101: KTSSGAEEAS SEKAGNFGGG AAGAGLVKVS MDGAPYLRKV DLKMYKSYQD LSDALAKMFS SFTMGNYGAQ GMIDFMNESK LMNLLNSSEY VPSYEDKDGD
201: WMLVGDVPWE MFVESCKRLR IMKGSEAVGL APRAMEKYCK NRS
Arabidopsis Description
IAA7Auxin-responsive protein IAA7 [Source:UniProtKB/Swiss-Prot;Acc:Q38825]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.