Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032520.1-P | Field mustard | nucleus | 99.12 | 99.56 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 96.93 | 96.93 |
| CDX89832 | Canola | nucleus | 87.72 | 89.29 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 89.47 | 89.08 |
| CDY18214 | Canola | nucleus | 86.84 | 88.39 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 87.28 | 86.9 |
| KRH34377 | Soybean | nucleus | 69.74 | 66.53 |
| CDY47148 | Canola | nucleus | 67.11 | 65.67 |
| CDY10694 | Canola | mitochondrion | 50.0 | 65.52 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 67.98 | 65.4 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 66.67 | 65.24 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 68.86 | 64.61 |
| Solyc09g083290.2.1 | Tomato | nucleus | 65.35 | 63.14 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 66.23 | 62.92 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 66.23 | 62.92 |
| PGSC0003DMT400015610 | Potato | nucleus | 64.91 | 62.18 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 66.67 | 61.79 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 60.09 | 59.31 |
| GSMUA_Achr10P... | Banana | nucleus | 62.28 | 58.92 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 60.53 | 58.47 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 59.65 | 57.38 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 60.53 | 56.56 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 60.09 | 56.38 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 60.96 | 56.05 |
| CDX94876 | Canola | nucleus | 41.23 | 54.97 |
| CDX92972 | Canola | nucleus | 41.23 | 54.97 |
| CDY10692 | Canola | nucleus | 41.23 | 54.65 |
| CDY35493 | Canola | nucleus | 40.79 | 54.39 |
| CDY40837 | Canola | nucleus | 40.79 | 54.39 |
| CDY10346 | Canola | nucleus | 40.79 | 54.07 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 57.02 | 53.94 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 58.33 | 52.78 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 58.33 | 52.57 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 57.89 | 52.38 |
| CDY36883 | Canola | nucleus | 39.04 | 51.74 |
| Os03t0742900-01 | Rice | vacuole | 53.07 | 51.27 |
| CDY53735 | Canola | nucleus | 38.6 | 51.16 |
| Os03t0633500-01 | Rice | cytosol | 52.19 | 51.07 |
| EER90896 | Sorghum | nucleus | 52.63 | 51.06 |
| Zm00001d033976_P002 | Maize | nucleus | 53.07 | 51.05 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 41.23 | 50.54 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 51.32 | 50.43 |
| TraesCS5A01G382600.1 | Wheat | nucleus | 51.32 | 50.21 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 51.32 | 50.0 |
| CDY63072 | Canola | nucleus | 87.28 | 50.0 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 41.67 | 49.74 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 41.67 | 49.74 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 54.82 | 49.41 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 51.32 | 49.37 |
| Zm00001d013302_P002 | Maize | nucleus | 49.12 | 49.12 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 38.6 | 48.89 |
| EES17334 | Sorghum | cytosol | 60.09 | 48.75 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 70.61 | 48.64 |
| CDY53305 | Canola | cytosol | 33.33 | 48.41 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 39.47 | 48.39 |
| CDY40881 | Canola | cytosol | 38.6 | 48.09 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 57.89 | 47.83 |
| CDY50750 | Canola | nucleus, plastid | 60.96 | 47.77 |
| Os12t0601300-01 | Rice | nucleus | 57.89 | 47.65 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 52.63 | 47.43 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 40.35 | 47.42 |
| CDY10069 | Canola | nucleus | 38.16 | 47.28 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 54.39 | 46.97 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 39.47 | 46.39 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 36.4 | 45.86 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 37.72 | 43.65 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 37.72 | 43.65 |
| CDY06836 | Canola | nucleus | 47.81 | 43.25 |
| CDY68807 | Canola | nucleus | 36.4 | 42.35 |
| CDY26042 | Canola | nucleus | 35.96 | 41.84 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 31.58 | 41.62 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 50.0 | 40.57 |
| CDY53800 | Canola | nucleus | 32.02 | 38.83 |
| CDY25617 | Canola | nucleus | 45.18 | 38.72 |
| CDX89499 | Canola | nucleus | 44.3 | 37.27 |
| Zm00001d041416_P001 | Maize | nucleus | 56.14 | 37.21 |
| CDY37837 | Canola | mitochondrion | 48.25 | 37.16 |
| CDY68170 | Canola | nucleus, plastid | 50.44 | 36.98 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 50.88 | 36.83 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 48.68 | 36.39 |
| CDY18679 | Canola | plastid | 49.12 | 35.9 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 48.68 | 33.74 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 49.12 | 33.73 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 39.91 | 32.97 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078H534 | UniProt:A0A078H534 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY32537 | ProteinID:CDY32537 | ProteinID:CDY32537.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00052524001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 | SUPFAM:SSF54277 | UniParc:UPI0004EE92E1 |
| SEG:seg | : | : | : | : | : |
Description
BnaA09g50590DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078H534]
Coordinates
chrLK032295:+:431066..433381
Molecular Weight (calculated)
25105.0 Da
IEP (calculated)
7.136
GRAVY (calculated)
-0.553
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGTVELNLR ETELCLGLPG GETGAPVTGT KRGFSETVDL KLNLNNEPES NEGSKTHDVV TSVSKEKSSS PKDPAKPPAK AQVVGWPPVR SYRKNVMGSC
101: QKPSGGTETA SFVKVSMDGA PYLRKVDLKM YKSYDELSNA LSNMFSSFTM GKYGGEEGMI DFMNERNMAL VNTWDYVPSY EDKDGDWMLV GDVPWPMFVD
201: TCKRLRLMKG SDAIGLAPRA MEKCKSRT
101: QKPSGGTETA SFVKVSMDGA PYLRKVDLKM YKSYDELSNA LSNMFSSFTM GKYGGEEGMI DFMNERNMAL VNTWDYVPSY EDKDGDWMLV GDVPWPMFVD
201: TCKRLRLMKG SDAIGLAPRA MEKCKSRT
001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Arabidopsis Description
IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.