Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46895 | Canola | cytosol | 35.93 | 83.33 |
| Bra021257.1-P | Field mustard | cytosol | 34.73 | 80.56 |
| CDX92140 | Canola | nucleus, plastid | 65.87 | 69.62 |
| CDX95843 | Canola | plastid | 62.28 | 67.1 |
| CDX82361 | Canola | cytosol, plastid | 60.48 | 64.33 |
| AT3G17600.1 | Thale cress | nucleus, plastid | 59.88 | 63.29 |
| CDY71609 | Canola | nucleus, plastid | 58.08 | 61.78 |
| Os01t0286900-01 | Rice | nucleus | 25.75 | 37.39 |
| GSMUA_Achr8P29850_001 | Banana | nucleus | 38.32 | 36.36 |
| GSMUA_Achr9P16800_001 | Banana | nucleus | 35.33 | 33.91 |
| EES00605 | Sorghum | nucleus, plastid | 37.72 | 32.64 |
| CDY25089 | Canola | plastid | 31.14 | 30.06 |
| CDY48005 | Canola | cytosol, plastid | 31.14 | 29.89 |
| CDY27511 | Canola | cytosol, plastid | 31.14 | 29.89 |
| Zm00001d040541_P001 | Maize | nucleus, plastid | 32.34 | 29.83 |
| CDY58757 | Canola | plastid | 30.54 | 29.65 |
| CDX67874 | Canola | plastid | 30.54 | 29.48 |
| CDY11402 | Canola | plastid | 29.94 | 28.25 |
| Os02t0723400-02 | Rice | nucleus | 29.94 | 24.39 |
| TraesCS1D01G084100.1 | Wheat | nucleus, plastid | 28.74 | 23.19 |
| CDY51701 | Canola | nucleus | 27.54 | 22.89 |
| Zm00001d008201_P001 | Maize | cytosol | 17.37 | 22.31 |
| HORVU1Hr1G017770.6 | Barley | cytosol, mitochondrion, vacuole | 25.75 | 20.77 |
| TraesCS1B01G100300.1 | Wheat | plastid | 28.74 | 20.25 |
| CDX87072 | Canola | cytosol | 20.96 | 20.0 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 20.36 | 19.54 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 20.36 | 19.54 |
| CDY38374 | Canola | nucleus | 27.54 | 19.33 |
| CDY35203 | Canola | nucleus | 27.54 | 18.93 |
| TraesCS1A01G082700.2 | Wheat | plastid | 29.34 | 18.63 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 28.74 | 17.71 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 28.74 | 17.71 |
| CDY18243 | Canola | nucleus | 23.95 | 17.32 |
| CDY53196 | Canola | nucleus | 23.35 | 17.18 |
| CDX87863 | Canola | nucleus | 25.75 | 16.93 |
| CDY19790 | Canola | cytosol | 19.76 | 16.92 |
| CDX89814 | Canola | nucleus | 23.35 | 16.6 |
| CDY33844 | Canola | nucleus | 24.55 | 16.21 |
| CDY19477 | Canola | nucleus | 22.75 | 16.17 |
| CDY17158 | Canola | nucleus | 22.75 | 16.1 |
| CDY59182 | Canola | nucleus | 21.56 | 16.0 |
| CDY22876 | Canola | nucleus | 23.95 | 15.81 |
| CDX84693 | Canola | nucleus | 22.75 | 15.7 |
| CDY46538 | Canola | nucleus | 25.15 | 15.56 |
| CDX79522 | Canola | nucleus | 22.75 | 15.45 |
| CDY53439 | Canola | nucleus | 25.15 | 15.38 |
| CDX68829 | Canola | nucleus | 20.36 | 14.91 |
| CDX75231 | Canola | nucleus | 19.76 | 14.29 |
| CDY34957 | Canola | nucleus | 22.75 | 14.13 |
| CDY43104 | Canola | nucleus | 22.16 | 13.86 |
| CDY64626 | Canola | cytosol | 22.16 | 13.75 |
| CDX82399 | Canola | nucleus | 22.16 | 13.6 |
| CDX75884 | Canola | cytosol | 21.56 | 13.28 |
| CDX92077 | Canola | nucleus | 22.16 | 12.98 |
| CDY13478 | Canola | nucleus | 17.96 | 12.35 |
| CDX72351 | Canola | nucleus | 17.96 | 12.15 |
| CDX92888 | Canola | nucleus | 28.14 | 11.6 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078IA56 | UniProt:A0A078IA56 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY46058 | ProteinID:CDY46058 | ProteinID:CDY46058.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| EnsemblPlantsGene:GSBRNA2T00083204001 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF3 | SUPFAM:SSF54277 | TMHMM:TMhelix | UniParc:UPI0004EF457B | SEG:seg | : |
Description
BnaC01g35050DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078IA56]
Coordinates
chrLK032648:+:194276..197516
Molecular Weight (calculated)
19131.9 Da
IEP (calculated)
8.224
GRAVY (calculated)
-0.087
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MEISNSYSPY SSSSVNSTSH LPSESSVNLS LSFTSLSLYF ATKVFFTSLL LCFFSVSVTS QDWPPITLKG LRLHQRGYDT ALFVKVYMEG VPIGRNLENL
101: SHIYFRGLVS SNVHTLSLVL TDDNRDRKQH VLTYQEKGGD WMMVGDITWD MFLETVRRLR ITRLERC
101: SHIYFRGLVS SNVHTLSLVL TDDNRDRKQH VLTYQEKGGD WMMVGDITWD MFLETVRRLR ITRLERC
001: MEVSNSCSSF SSSSVDSTKP SPSESSVNLS LSLTFPSTSP QREARQDWPP IKSRLRDTLK GRRLLRRGDD TSLFVKVYME GVPIGRKLDL CVFSGYESLL
101: ENLSHMFDTS IICGNRDRKH HVLTYEDKDG DWMMVGDIPW DMFLETVRRL KITRPERY
101: ENLSHMFDTS IICGNRDRKH HVLTYEDKDG DWMMVGDIPW DMFLETVRRL KITRPERY
Arabidopsis Description
IAA31Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A178V8S2]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.