Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G51920.1 | Thale cress | cytosol | 63.44 | 39.07 |
| CDX95314 | Canola | cytosol | 59.14 | 36.42 |
| CDY23174 | Canola | cytosol | 59.14 | 36.42 |
Protein Annotations
| EnsemblPlants:CDX73678 | EnsemblPlantsGene:GSBRNA2T00109268001 | Gene3D:1.10.238.10 | InterPro:EF-hand-dom_pair | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF211 |
| ProteinID:CDX73678 | ProteinID:CDX73678.1 | SEG:seg | SUPFAM:SSF47473 | UniParc:UPI0004EF153E | MapMan:35.2 |
Description
BnaC08g23250D
Coordinates
chrLK031799:+:2072227..2072596
Molecular Weight (calculated)
10435.2 Da
IEP (calculated)
4.540
GRAVY (calculated)
-0.677
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MKSMGKNPKA KQLQEMMSDV DIFGDDGIIT FDDFLYIMVQ NTSQESASGE LLEVFRVFDR DGDCNNPPRG TQADSAAAHR PQPLHYGNYL PHN
001: MADAFTDEQI QEFYEAFCLI DKDSDGFITK EKLTKVMKSM GKNPKAEQLQ QMMSDVDIFG NGGITFDDFL YIMAQNTSQE SASDELIEVF RVFDRDGDGL
101: ISQLELGEGM KDMGMKITAE EAEHMVREAD LDGDGFLSFH EFSKMMIAAS Y
101: ISQLELGEGM KDMGMKITAE EAEHMVREAD LDGDGFLSFH EFSKMMIAAS Y
Arabidopsis Description
CML9Calmodulin-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9S744]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.