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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • plasma membrane 4
  • extracellular 3
  • endoplasmic reticulum 4
  • vacuole 3
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G23650.1 CDX73678 AT3G51920.1 17360592
AT4G23650.1 CDX95314 AT3G51920.1 17360592
AT4G23650.1 CDY23174 AT3G51920.1 17360592
AT4G23650.1 CDY06478 AT4G14640.1 17360592
AT4G23650.1 CDX92401 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY10955 Canola cytosol 60.65 99.2
CDY44125 Canola cytosol, plastid 80.33 94.1
CDY54853 Canola plastid 80.0 93.71
AT4G23650.1 Thale cress plastid 78.7 91.49
KRH27875 Soybean nucleus 64.23 78.22
TraesCS1A01G424200.1 Wheat cytosol 57.89 77.39
TraesCS1D01G433400.1 Wheat cytosol, golgi 57.89 77.39
TraesCS1B01G456700.1 Wheat cytosol 57.72 77.17
HORVU1Hr1G092710.1 Barley cytosol, plasma membrane 58.86 75.42
KRH77599 Soybean nucleus 64.39 75.0
GSMUA_Achr6P31900_001 Banana mitochondrion 53.17 75.0
VIT_02s0025g00690.t01 Wine grape cytosol 64.23 74.81
Os01t0622600-01 Rice plasma membrane 61.79 73.36
KRH59992 Soybean endoplasmic reticulum 61.63 73.17
Solyc08g008170.2.1 Tomato plastid 60.98 72.67
PGSC0003DMT400014939 Potato plastid 60.49 71.95
TraesCS3D01G228700.1 Wheat cytosol, mitochondrion 60.49 71.81
TraesCS3B01G254500.1 Wheat golgi, unclear 60.49 71.81
TraesCS3A01G224900.1 Wheat cytosol, mitochondrion 60.49 71.81
EES01094 Sorghum cytosol, mitochondrion 61.3 71.81
Zm00001d044185_P005 Maize cytosol, mitochondrion 60.98 71.56
Zm00001d011392_P001 Maize cytosol, plastid 61.14 70.94
GSMUA_Achr2P06360_001 Banana plasma membrane 58.37 69.57
GSMUA_Achr9P05370_001 Banana cytosol 50.41 69.51
Os05t0585500-01 Rice plasma membrane 60.65 68.82
Zm00001d009708_P001 Maize mitochondrion 60.0 68.46
GSMUA_Achr1P05040_001 Banana cytosol 52.68 68.35
EES20022 Sorghum cytosol, mitochondrion 59.67 67.84
CDY63783 Canola cytosol 55.12 65.57
CDY44912 Canola cytosol 54.96 65.38
CDX69700 Canola cytosol 55.28 65.13
CDX97174 Canola cytosol 55.28 65.13
CDX78468 Canola cytosol 55.28 65.01
CDX70450 Canola cytosol 55.28 65.01
CDX92536 Canola cytosol 54.47 64.8
CDY13993 Canola cytosol 54.31 64.6
CDX85697 Canola cytosol 53.33 63.94
CDX91168 Canola cytosol 53.66 63.1
HORVU3Hr1G055730.3 Barley plastid 60.65 62.79
KRH41261 Soybean cytosol 42.44 59.73
CDY47496 Canola cytosol 46.34 59.5
CDX97315 Canola cytosol, plasma membrane 50.24 59.42
CDY54794 Canola cytosol 45.85 58.63
CDY59100 Canola cytosol 45.85 58.63
CDX91224 Canola cytosol 40.98 58.06
CDY36037 Canola nucleus, plasma membrane 50.08 58.0
CDX82244 Canola cytosol 50.08 57.68
CDY37101 Canola cytosol 45.37 56.14
CDX87164 Canola cytosol 44.23 56.08
CDX73342 Canola nucleus, plasma membrane 45.2 55.94
CDY07254 Canola cytosol 49.27 55.8
CDX73219 Canola cytosol, mitochondrion 50.08 55.8
CDY66815 Canola cytosol, plastid 50.08 55.8
CDY16860 Canola cytosol 44.06 55.76
CDY24863 Canola cytosol 48.94 55.43
CDY05064 Canola cytosol 45.04 55.4
CDX90725 Canola cytosol 45.04 55.4
CDX80376 Canola cytosol 44.06 55.19
CDY40788 Canola cytosol 43.25 54.96
CDY46963 Canola cytosol 37.89 54.69
CDY46962 Canola cytosol 41.14 54.64
CDY46964 Canola cytosol 42.76 54.45
CDX69129 Canola nucleus, plasma membrane 48.13 54.41
CDY07866 Canola cytosol 47.48 54.17
CDX87997 Canola cytosol 47.48 54.17
CDX75493 Canola cytosol 47.97 54.13
CDY43077 Canola cytosol 45.85 54.02
CDY52603 Canola cytosol 39.19 53.91
CDY40790 Canola cytosol 40.49 53.9
CDX82886 Canola nucleus, plasma membrane 48.78 53.86
CDY16557 Canola cytosol 42.6 53.8
CDX92440 Canola cytosol 43.09 53.64
CDX79112 Canola cytosol 48.78 53.29
CDY26800 Canola cytosol 47.32 53.1
CDX72530 Canola cytosol 42.44 52.2
CDY40789 Canola cytosol 43.09 51.56
CDY40426 Canola cytosol 34.31 51.46
CDX70192 Canola cytosol, plastid 47.8 51.4
CDX98791 Canola cytosol, plastid 47.8 51.31
CDX80925 Canola cytosol 47.8 51.31
CDY07688 Canola cytosol 45.37 50.73
CDY14419 Canola cytosol 45.37 50.73
CDY11313 Canola cytosol 48.13 50.34
CDY00963 Canola plastid 46.67 50.0
CDY08584 Canola cytosol 46.67 49.83
CDY00688 Canola plastid 47.15 48.33
CDX73914 Canola plastid 46.99 48.25
CDY32077 Canola cytosol 35.12 41.7
CDX88038 Canola cytosol 45.2 30.75
CDY00964 Canola plastid 0.49 0.9
CDY00689 Canola plastid 0.33 0.6
Protein Annotations
Gene3D:1.10.238.10Gene3D:1.10.510.10MapMan:18.4.5.4Gene3D:3.30.200.20GO:A0A078JAX6UniProt:A0A078JAX6
EnsemblPlants:CDY62741ProteinID:CDY62741ProteinID:CDY62741.1InterPro:EF-hand-dom_pairInterPro:EF_Hand_1_Ca_BSInterPro:EF_hand_dom
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005509
GO:GO:0005524GO:GO:0006464GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016301GO:GO:0016740GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00037555001InterPro:IPR000719InterPro:IPR002048
InterPro:Kinase-like_dom_sfPFAM:PF00069PFAM:PF13499ScanProsite:PS00018ScanProsite:PS00107ScanProsite:PS00108
PFscan:PS50011PFscan:PS50222PANTHER:PTHR24349PANTHER:PTHR24349:SF182InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BS
SMART:SM00054SMART:SM00220SUPFAM:SSF47473SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASSignalP:SignalP-noTM
UniParc:UPI0004EEE45ASEG:seg::::
Description
BnaC07g50270DBnaC07g50270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAX6]
Coordinates
chrLK034185:+:32530..35715
Molecular Weight (calculated)
69470.1 Da
IEP (calculated)
7.706
GRAVY (calculated)
-0.437
Length
615 amino acids
Sequence
(BLAST)
001: MSWSKLFYLF SFIHSLKFIL QWENNLSFYN IFFPKIRGFN CSSYSPIKTR HVVSIFPCSS SDVKDHRIFC LSVDFIDSEK NKVRSAMGHR HSKSKSSGPP
101: PSSSSSTNVV HHVKPSGERR GSSGSGSAPV GSSSTGGSRS AASAQQNGRI LGRPMENVRG TYDFGKELGR GQFGVTYLVT HKETKKLFAC KSIPTRRLVH
201: RDDIEDVRRE VQIMHHLSGH RNIVDLKGAY EDRHSVNLIM ELCEGGELFD RIIAKGHYTE RAAADLCRQM VMVVHSCHSM GVMHRDLKPE NFLFLSKDEN
301: SPLKATDFGL SVFFKPGDKF KDLVGSAYYV APEVLKRNYG PEADIWSAGV ILFILISGVP PFWGENETAI FDAILKGELD FSADPWPTVS AGAKDLVKRM
401: LKYDPKDRLT ASEVLNHPWI KEDGEASDKP LDNAVLSRMK QFRAMNKLKK MALKVIAENL SEEEIIGLKE MFKALDTDKN GIVTLEELRT GLPKLGNKIS
501: EAEIRQLMEA ADMDGDGSID YLEFISATMH MNRIEREDHL YTAFQYFDKD NSGYITMEEL EQAMKKYNMG DDKSIKEIIA EVDTDRDGKI NYEEFVAMMK
601: KGNPELVTNR RRVNM
Best Arabidopsis Sequence Match ( AT4G23650.1 )
(BLAST)
001: MGHRHSKSKS SDPPPSSSSS SSGNVVHHVK PAGERRGSSG SGTVGSSGSG TGGSRSTTST QQNGRILGRP MEEVRRTYEF GRELGRGQFG VTYLVTHKET
101: KQQVACKSIP TRRLVHKDDI EDVRREVQIM HHLSGHRNIV DLKGAYEDRH SVNLIMELCE GGELFDRIIS KGLYSERAAA DLCRQMVMVV HSCHSMGVMH
201: RDLKPENFLF LSKDENSPLK ATDFGLSVFF KPGDKFKDLV GSAYYVAPEV LKRNYGPEAD IWSAGVILYI LLSGVPPFWG ENETGIFDAI LQGQLDFSAD
301: PWPALSDGAK DLVRKMLKYD PKDRLTAAEV LNHPWIREDG EASDKPLDNA VLSRMKQFRA MNKLKKMALK VIAENLSEEE IIGLKEMFKS LDTDNNGIVT
401: LEELRTGLPK LGSKISEAEI RQLMEAADMD GDGSIDYLEF ISATMHMNRI EREDHLYTAF QFFDNDNSGY ITMEELELAM KKYNMGDDKS IKEIIAEVDT
501: DRDGKINYEE FVAMMKKGNP ELVPNRRRM
Arabidopsis Description
CPK3CPK3 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.