CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80404
CDX87147
CDX88065
CDY44267
CDY46973

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10660.1	CDX80404	AT5G24030.1	24280384
AT3G10660.1	CDX87147	AT5G24030.1	24280384
AT3G10660.1	CDX88065	AT5G24030.1	24280384
AT3G10660.1	CDY44267	AT5G24030.1	24280384
AT3G10660.1	CDY46973	AT5G24030.1	24280384

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00689	Canola	plastid	86.27	86.53
Bra029859.1-P	Field mustard	plastid	98.21	34.63
HORVU5Hr1G030810.1	Barley	cytosol	6.87	3.34
CDX88038	Canola	cytosol	5.97	2.21
CDX73219	Canola	cytosol, mitochondrion	1.19	0.72
CDY66815	Canola	cytosol, plastid	1.19	0.72
GSMUA_AchrUn_...	Banana	cytosol	1.19	0.71
CDY52603	Canola	cytosol	0.9	0.67
AT3G10660.1	Thale cress	cytosol, plastid	1.19	0.62
CDX73342	Canola	nucleus, plasma membrane	0.9	0.6
CDY37101	Canola	cytosol	0.9	0.6
CDX72530	Canola	cytosol	0.9	0.6
GSMUA_Achr7P07810_001	Banana	cytosol, plastid	0.9	0.6
CDY07866	Canola	cytosol	0.9	0.56
CDX87997	Canola	cytosol	0.9	0.56
CDY26800	Canola	cytosol	0.9	0.55
CDY07688	Canola	cytosol	0.9	0.55
CDY14419	Canola	cytosol	0.9	0.55
VIT_13s0175g00080.t01	Wine grape	cytosol, plastid	0.9	0.53
CDX70192	Canola	cytosol, plastid	0.9	0.52
CDX80925	Canola	cytosol	0.9	0.52
CDX98791	Canola	cytosol, plastid	0.9	0.52
CDY00963	Canola	plastid	0.9	0.52
CDY08584	Canola	cytosol	0.9	0.52
PGSC0003DMT400002592	Potato	plastid	0.9	0.52
Solyc11g006370.1.1	Tomato	plastid	0.9	0.52
KRG90147	Soybean	cytosol, plastid	0.9	0.52
KRH33395	Soybean	endoplasmic reticulum, nucleus	0.9	0.52
PGSC0003DMT400065419	Potato	plastid	0.9	0.52
Solyc04g009800.2.1	Tomato	cytosol, plastid	0.9	0.52
CDY11313	Canola	cytosol	0.9	0.51
Os03t0788500-01	Rice	cytosol	0.9	0.5
Zm00001d040996_P003	Maize	plastid	0.9	0.49
Zm00001d034372_P001	Maize	cytosol	0.9	0.49
CDY62741	Canola	endoplasmic reticulum, plasma membrane	0.9	0.49
KXG23457	Sorghum	plastid	0.9	0.49
EER93328	Sorghum	cytosol	0.9	0.49
Zm00001d013109_P002	Maize	plasma membrane	0.9	0.48
TraesCS5D01G434500.2	Wheat	cytosol	0.9	0.48
TraesCS5B01G109300.1	Wheat	plastid	0.9	0.48
TraesCS5B01G428400.2	Wheat	cytosol	0.9	0.48
TraesCS5A01G426500.1	Wheat	cytosol	0.9	0.48
GSMUA_Achr4P22740_001	Banana	cytosol, plastid	0.9	0.47
CDX91224	Canola	cytosol	0.6	0.46
GSMUA_Achr7P01360_001	Banana	cytosol	0.9	0.45
CDY05064	Canola	cytosol	0.6	0.4
CDX90725	Canola	cytosol	0.6	0.4
CDX92536	Canola	cytosol	0.6	0.39
CDY13993	Canola	cytosol	0.6	0.39
CDY44912	Canola	cytosol	0.6	0.39
CDY63783	Canola	cytosol	0.6	0.39
CDY32077	Canola	cytosol	0.6	0.39
CDX97315	Canola	cytosol, plasma membrane	0.6	0.38
CDX69700	Canola	cytosol	0.6	0.38
CDX97174	Canola	cytosol	0.6	0.38
CDX70450	Canola	cytosol	0.6	0.38
CDX78468	Canola	cytosol	0.6	0.38
CDY54853	Canola	plastid	0.6	0.38
CDY44125	Canola	cytosol, plastid	0.6	0.38
CDY36037	Canola	nucleus, plasma membrane	0.6	0.38
CDX82244	Canola	cytosol	0.6	0.37
CDX69129	Canola	nucleus, plasma membrane	0.6	0.37
CDX75493	Canola	cytosol	0.6	0.37
CDX82886	Canola	nucleus, plasma membrane	0.6	0.36
CDX79112	Canola	cytosol	0.6	0.36
TraesCS5D01G124000.1	Wheat	plastid	0.6	0.32
CDY40790	Canola	cytosol	0.3	0.22
CDY46962	Canola	cytosol	0.3	0.22
CDY46964	Canola	cytosol	0.3	0.21
CDY40788	Canola	cytosol	0.3	0.21
CDX87164	Canola	cytosol	0.3	0.21
CDY16860	Canola	cytosol	0.3	0.21
CDY16557	Canola	cytosol	0.3	0.21
CDX80376	Canola	cytosol	0.3	0.2
CDX92440	Canola	cytosol	0.3	0.2
CDY40789	Canola	cytosol	0.3	0.19
CDY43077	Canola	cytosol	0.3	0.19
CDY24863	Canola	cytosol	0.3	0.18
CDY07254	Canola	cytosol	0.3	0.18
CDX73914	Canola	plastid	0.3	0.17
CDY00688	Canola	plastid	0.3	0.17
Os12t0486600-00	Rice	plasma membrane	0.0	0.0
CDY47496	Canola	cytosol	0.0	0.0
CDX85697	Canola	cytosol	0.0	0.0
CDY40426	Canola	cytosol	0.0	0.0
CDY46963	Canola	cytosol	0.0	0.0
CDY59100	Canola	cytosol	0.0	0.0
CDY54794	Canola	cytosol	0.0	0.0
CDY10955	Canola	cytosol	0.0	0.0
CDX91168	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:7.11.1.1.1.2	GO:A0A078EJN8	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS
EnsemblPlants:CDY00964	ProteinID:CDY00964	ProteinID:CDY00964.1	InterPro:FeS-cluster_ATPase_SufC	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	GO:GO:0016887	EnsemblPlantsGene:GSBRNA2T00110975001
InterPro:IPR003439	InterPro:P-loop_NTPase	PFAM:PF00005	ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR43204
PANTHER:PTHR43204:SF1	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01978	UniParc:UPI0004EE404A	SEG:seg

Description

BnaC05g42360D

Coordinates

chrLK031923:-:325786..327944

Molecular Weight (calculated)

36594.3 Da

IEP (calculated)

7.756

GRAVY (calculated)

-0.134

Length

335 amino acids

Sequence
(BLAST)

001: MAGVNLQLRH SVTQLFPSIS SPPPPPQRFQ LGTPPSRVLF CNLRANSAAA PTLRTTRRSD IIAASSVGSS TSSDSVVGDR DEVGRIPLLE VKDLRAVIVE
101: SRQEILKGVN LVVYEGEIHA VMGKNGSGKS TFSKVLVGHP DYEVTGGSVV FKGQNLLDME PEERSLAGLF MSFQSPVEIP GVSNMDFLNM AFNARKRKLG
201: QPELDPIQFY SHLVSKLEVV NMKTDFLNRN VNEGFSGGER KRNEILQLAV LGAELAILDE IDSGLDVDAL QDVAKAVNGL LTPKNSVLMI THYQRLLDYI
301: KPTLIHIMEN GRIIKTGDKS LAKLLEKEGY KAISG

Best Arabidopsis Sequence Match ( AT3G10670.1 )
(BLAST)

001: MAGVNLQLRH AYSIAQFVPT VSSPPPLPTQ RVRLGTSPSR VLLCNLRANS AAAPILRTTR RSVIVSASSV SSAVDSDSLV EDRDDVGRIP LLEVRDLRAV
101: IAESRQEILK GVNLVVYEGE VHAVMGKNGS GKSTFSKVLV GHPDYEVTGG SIVFKGQNLL DMEPEDRSLA GLFMSFQSPV EIPGVSNMDF LNMAFNARKR
201: KLGQPELDPI QFYSHLVSKL EVVNMKTDFL NRNVNEGFSG GERKRNEILQ LAVLGAELAI LDEIDSGLDV DALQDVAKAV NGLLTPKNSV LMITHYQRLL
301: DYIKPTLIHI MENGRIIKTG DNSLAKLLEK EGYKAISG

Arabidopsis Description

ABCI6ABC transporter I family member 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAF5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.