Factsheet for PGSC0003DMT400065419

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400021864
PGSC0003DMT400051388
PGSC0003DMT400074359

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10660.1	PGSC0003DMT400021864	AT5G24030.1	24280384
AT3G10660.1	PGSC0003DMT400051388	AT5G24030.1	24280384
AT3G10660.1	PGSC0003DMT400074359	AT5G24030.1	24280384

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g009800.2.1	Tomato	cytosol, plastid	98.45	98.45
PGSC0003DMT400002592	Potato	plastid	86.23	86.68
VIT_13s0175g00080.t01	Wine grape	cytosol, plastid	82.1	83.83
KRG90147	Soybean	cytosol, plastid	80.21	80.48
KRH33395	Soybean	endoplasmic reticulum, nucleus	80.03	80.03
CDX70192	Canola	cytosol, plastid	78.49	79.72
CDX98791	Canola	cytosol, plastid	78.31	79.41
CDX80925	Canola	cytosol	78.14	79.23
GSMUA_Achr7P07810_001	Banana	cytosol, plastid	67.81	78.33
CDY11313	Canola	cytosol	79.0	78.06
Bra009420.1-P	Field mustard	cytosol, plastid	79.35	78.0
CDY08584	Canola	cytosol	76.25	76.91
AT5G04870.1	Thale cress	cytosol, plastid	80.55	76.72
Bra005824.1-P	Field mustard	cytosol, plastid	79.52	76.24
GSMUA_AchrUn_...	Banana	cytosol	73.15	75.62
CDY00963	Canola	plastid	74.7	75.61
CDX73914	Canola	plastid	77.11	74.79
CDY00688	Canola	plastid	76.59	74.17
Os03t0788500-01	Rice	cytosol	74.35	72.12
PGSC0003DMT400018575	Potato	cytosol	66.61	71.14
Zm00001d034372_P001	Maize	cytosol	74.87	71.08
EER93328	Sorghum	cytosol	75.39	70.99
AT3G10660.1	Thale cress	cytosol, plastid	77.8	69.97
TraesCS5D01G434500.2	Wheat	cytosol	74.35	69.23
Zm00001d013109_P002	Maize	plasma membrane	73.67	69.03
TraesCS5B01G428400.2	Wheat	cytosol	74.18	68.74
TraesCS5A01G426500.1	Wheat	cytosol	74.18	68.74
PGSC0003DMT400054991	Potato	cytosol	68.85	68.73
Zm00001d040996_P003	Maize	plastid	71.6	68.31
PGSC0003DMT400054983	Potato	cytosol	70.22	68.23
KXG23457	Sorghum	plastid	71.43	67.37
GSMUA_Achr4P22740_001	Banana	cytosol, plastid	74.01	66.77
PGSC0003DMT400072554	Potato	cytosol	69.02	66.06
PGSC0003DMT400067082	Potato	cytosol, plastid	56.8	65.87
TraesCS5B01G109300.1	Wheat	plastid	70.4	65.54
TraesCS5D01G124000.1	Wheat	plastid	70.22	65.38
PGSC0003DMT400060262	Potato	cytosol	56.28	65.01
PGSC0003DMT400002331	Potato	cytosol	56.45	64.95
PGSC0003DMT400043320	Potato	cytosol, plastid	61.96	63.49
GSMUA_Achr7P01360_001	Banana	cytosol	72.81	63.04
PGSC0003DMT400072292	Potato	cytosol, plastid	67.64	61.6
HORVU5Hr1G030810.1	Barley	cytosol	70.22	59.22
PGSC0003DMT400014939	Potato	plastid	51.64	58.03
PGSC0003DMT400071663	Potato	cytosol, plasma membrane	49.74	56.78
PGSC0003DMT400024436	Potato	cytosol	51.12	56.68
PGSC0003DMT400011823	Potato	cytosol	50.95	55.33
PGSC0003DMT400057484	Potato	cytosol	48.88	54.51
Os12t0486600-00	Rice	plasma membrane	69.02	52.01
PGSC0003DMT400025581	Potato	cytosol	48.19	51.85
Bra029859.1-P	Field mustard	plastid	76.59	46.84
Bra001373.1-P	Field mustard	plastid	78.14	46.8
CDY00964	Canola	plastid	0.52	0.9
CDY00689	Canola	plastid	0.34	0.6

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.510.10	MapMan:18.4.5.4	Gene3D:3.30.200.20	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005509	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:IPR002048	InterPro:Kinase-like_dom_sf	UniProt:M1CDX9	PFAM:PF00069	PFAM:PF13499	EnsemblPlantsGene:PGSC0003DMG400025435
PGSC:PGSC0003DMG400025435	EnsemblPlants:PGSC0003DMT400065419	ScanProsite:PS00018	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PFscan:PS50222	PANTHER:PTHR24349	PANTHER:PTHR24349:SF161	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00054
SMART:SM00220	SUPFAM:SSF47473	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000296D1C2	SEG:seg

Description

Calcium-dependent protein kinase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400025435]

Coordinates

chr4:+:5488030..5494063

Molecular Weight (calculated)

64592.9 Da

IEP (calculated)

5.558

GRAVY (calculated)

-0.420

Length

581 amino acids

Sequence
(BLAST)

001: MGNTCVGPSI SRNRFLQSVS AAMWPSRVPD DTASTTNGGS SRGGTVESGK DPDVVVQNRA PEQMTMPKSE QKEVEPVKKE EEPVKPKKAV EMKRVGSAGL
101: KTDSVLQKKT GNLKEFFSIG KKLGQGQFGT TFKCVEKGTG KEYACKSIAK RKLLTDDDVE DVRREIQIMH HLAGHPNVIS IKGAYEDAVA VHVVMERCAG
201: GELFDRIIQR GHYTERKAAE LTRTIFGVVE ACHSLSVMHR DLKPENFLFV DQKEDSLLKT IDFGLSVFFK PGERFTDVVG SPYYVAPEVL KKRYGPEADV
301: WSAGVIVYIL LSGVPPFWAE NEQGIFEQVL HGDLDFSSDP WPSISEDAKD LVRGMLVRDP RKRLTAHEVL CHRWVQVDGV APDKPLDSAV LSRMKQFSAM
401: NKLKKMALRV IAESLSEEEI AGLKEMFKMI DTDNSGQITF EELKVGLKRV GANLKESEIY DLMQAADVDN SGTIDYGEFI AATLHFNKIE REDHLFAAFS
501: YFDKDGSGYI TADELQQACE EFGIGNVHLE DMIRDADQDN DGRIDYNEFV AMMQKGHPAS GGGKQGLEHS FSTGFRDALK L

Best Arabidopsis Sequence Match ( AT5G04870.1 )
(BLAST)

001: MGNTCVGPSR NGFLQSVSAA MWRPRDGDDS ASMSNGDIAS EAVSGELRSR LSDEVQNKPP EQVTMPKPGT DVETKDREIR TESKPETLEE ISLESKPETK
101: QETKSETKPE SKPDPPAKPK KPKHMKRVSS AGLRTESVLQ RKTENFKEFY SLGRKLGQGQ FGTTFLCVEK TTGKEFACKS IAKRKLLTDE DVEDVRREIQ
201: IMHHLAGHPN VISIKGAYED VVAVHLVMEC CAGGELFDRI IQRGHYTERK AAELTRTIVG VVEACHSLGV MHRDLKPENF LFVSKHEDSL LKTIDFGLSM
301: FFKPDDVFTD VVGSPYYVAP EVLRKRYGPE ADVWSAGVIV YILLSGVPPF WAETEQGIFE QVLHGDLDFS SDPWPSISES AKDLVRKMLV RDPKKRLTAH
401: QVLCHPWVQV DGVAPDKPLD SAVLSRMKQF SAMNKFKKMA LRVIAESLSE EEIAGLKEMF NMIDADKSGQ ITFEELKAGL KRVGANLKES EILDLMQAAD
501: VDNSGTIDYK EFIAATLHLN KIEREDHLFA AFTYFDKDGS GYITPDELQQ ACEEFGVEDV RIEELMRDVD QDNDGRIDYN EFVAMMQKGS ITGGPVKMGL
601: EKSFSIALKL

Arabidopsis Description

CPK1CPK1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQJ5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.