Factsheet for PGSC0003DMT400054991

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400021864
PGSC0003DMT400051388
PGSC0003DMT400074359

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38910.1	PGSC0003DMT400021864	AT5G24030.1	24280384
AT2G38910.1	PGSC0003DMT400051388	AT5G24030.1	24280384
AT2G38910.1	PGSC0003DMT400074359	AT5G24030.1	24280384

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g006730.2.1	Tomato	cytosol	97.08	97.08
PGSC0003DMT400018575	Potato	cytosol	77.66	83.09
VIT_08s0032g00780.t01	Wine grape	cytosol	76.29	78.17
PGSC0003DMT400072292	Potato	cytosol, plastid	82.3	75.08
CDY07688	Canola	cytosol	70.27	74.36
CDY14419	Canola	cytosol	70.27	74.36
Bra000105.1-P	Field mustard	cytosol	72.16	74.2
KRH32931	Soybean	plastid	75.09	73.45
GSMUA_Achr9P25890_001	Banana	plastid	59.62	72.59
AT2G38910.1	Thale cress	cytosol, plastid	72.68	72.56
PGSC0003DMT400065419	Potato	plastid	68.73	68.85
Os07t0161600-01	Rice	plasma membrane	67.01	68.66
TraesCS2D01G249900.2	Wheat	cytosol, plastid	66.15	68.51
HORVU2Hr1G058530.2	Barley	cytosol, plastid	66.49	68.5
Zm00001d034376_P001	Maize	plastid	68.21	68.45
EER90764	Sorghum	plastid	68.73	68.38
TraesCS2B01G269200.3	Wheat	cytosol, plastid	66.15	68.02
TraesCS2A01G248200.3	Wheat	cytosol, plastid	66.15	68.02
PGSC0003DMT400002592	Potato	plastid	67.35	67.82
Zm00001d013105_P004	Maize	cytosol, plastid	67.53	67.29
EER98014	Sorghum	cytosol, plastid	66.15	66.27
TraesCS5B01G428700.1	Wheat	cytosol	66.49	66.04
Zm00001d007912_P009	Maize	cytosol, plastid	66.84	65.16
TraesCS5A01G426800.2	Wheat	cytosol	66.67	63.61
Os03t0789000-00	Rice	cytosol, plasma membrane	64.26	63.5
TraesCS5D01G434800.2	Wheat	cytosol	66.49	63.44
PGSC0003DMT400067082	Potato	cytosol, plastid	54.47	63.27
PGSC0003DMT400060262	Potato	cytosol	54.47	63.02
PGSC0003DMT400054983	Potato	cytosol	64.26	62.54
PGSC0003DMT400002331	Potato	cytosol	53.44	61.58
PGSC0003DMT400043320	Potato	cytosol, plastid	59.45	61.02
PGSC0003DMT400072554	Potato	cytosol	63.06	60.46
PGSC0003DMT400014939	Potato	plastid	50.34	56.67
PGSC0003DMT400024436	Potato	cytosol	50.34	55.92
PGSC0003DMT400071663	Potato	cytosol, plasma membrane	47.59	54.42
PGSC0003DMT400011823	Potato	cytosol	49.83	54.21
PGSC0003DMT400057484	Potato	cytosol	47.59	53.17
PGSC0003DMT400025581	Potato	cytosol	48.8	52.59

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.510.10	EntrezGene:102592681	MapMan:18.4.5.4	Gene3D:3.30.200.20	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005509	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:IPR002048	InterPro:Kinase-like_dom_sf	UniProt:M1BX65	PFAM:PF00069	PFAM:PF13499	EnsemblPlantsGene:PGSC0003DMG400021342
PGSC:PGSC0003DMG400021342	EnsemblPlants:PGSC0003DMT400054991	ScanProsite:PS00018	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PFscan:PS50222	PANTHER:PTHR24349	PANTHER:PTHR24349:SF81	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00054
SMART:SM00220	SUPFAM:SSF47473	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000294BB97	RefSeq:XP_006348423.1
SEG:seg	:	:	:	:	:

Description

Calcium-dependent protein kinase 20 [Source:PGSC_GENE;Acc:PGSC0003DMG400021342]

Coordinates

chr1:-:2578483..2583492

Molecular Weight (calculated)

64630.1 Da

IEP (calculated)

5.951

GRAVY (calculated)

-0.408

Length

582 amino acids

Sequence
(BLAST)

001: MGNTCIGPKL GNNGFLQSVT AVVWKTRQQE HLPLANKGDS NSHKTQEHSS VGSSKKVDGN DTNRFGGTQS TPPPHLKISG DDTNEKNSSS NVNNKPVEGV
101: KQNKPSHVKR VSSIGLKIDS VLGRKTGNLK EICSLGRKLG QGQFGTTYLC VDKVHGKELA CKSIAKRKLN TEEDVEDVRR EIQIMHHLAG HPSVVQIVGA
201: YEDAVEVHVV MELCAGGELF DRILQRGHYS EKKAAELARV IVGVVEACHS MGVMHRDLKP ENFLFINQDE DSPLKTIDFG LSVFFKPGEI FTDVVGSPYY
301: VAPEVLRKHY GLECDIWSAG VIIYILLSGV PPFWEETEQG IFEQVLKGEL DFVSEPWPSI SESAKDLVRK MLVRDPKKRL TAHEVLCHPW VRVGGVAPDK
401: PLDSAVLTRL NQFSAMNKLK KIAVRVIAES LSAEEIAGLK EMFKMLDTDN SGNITLEELK KGLERVGADL KDSEITSLMQ AADTDNSGTI DYGEFIAAML
501: HLNKIQKEDH MYAAFSYFDQ DGSGYITKDE LQQACEKFGM SNIPIEELMR EVDQDNDGRI DYNEFVAMMQ DTGFGEMGSR RR

Best Arabidopsis Sequence Match ( AT2G38910.1 )
(BLAST)

001: MGNTCVGPNL NPNGFLQSVS AAVWRNQKPD DSIKSSKDES SRKKNDKSVN GDDSNGHVSS TVDPAPSTLP TPSTPPPPVK MANEEPPPKP ITENKEDPNS
101: KPQKKEAHMK RMASAGLQID SVLGRKTENL KDIYSVGRKL GQGQFGTTFL CVDKKTGKEF ACKTIAKRKL TTPEDVEDVR REIQIMHHLS GHPNVIQIVG
201: AYEDAVAVHV VMEICAGGEL FDRIIQRGHY TEKKAAELAR IIVGVIEACH SLGVMHRDLK PENFLFVSGD EEAALKTIDF GLSVFFKPGE TFTDVVGSPY
301: YVAPEVLRKH YSHECDVWSA GVIIYILLSG VPPFWDETEQ GIFEQVLKGD LDFISEPWPS VSESAKDLVR RMLIRDPKKR MTTHEVLCHP WARVDGVALD
401: KPLDSAVLSR LQQFSAMNKL KKIAIKVIAE SLSEEEIAGL KEMFKMIDTD NSGHITLEEL KKGLDRVGAD LKDSEILGLM QAADIDNSGT IDYGEFIAAM
501: VHLNKIEKED HLFTAFSYFD QDGSGYITRD ELQQACKQFG LADVHLDDIL REVDKDNDGR IDYSEFVDMM QDTGFGKMGL KVS

Arabidopsis Description

CPK20CPK20 [Source:UniProtKB/TrEMBL;Acc:A0A178VWI7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.