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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
  • plastid 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
EES20021
KXG22628
KXG22629
KXG24404
KXG28459
KXG31512
OQU77336
OQU77636
OQU87187

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38910.1 EES20021 AT5G24030.1 24280384
AT2G38910.1 KXG22628 AT5G24030.1 24280384
AT2G38910.1 KXG22629 AT5G24030.1 24280384
AT2G38910.1 KXG24404 AT5G24030.1 24280384
AT2G38910.1 KXG28459 AT5G24030.1 24280384
AT2G38910.1 KXG31512 AT5G24030.1 24280384
AT2G38910.1 OQU77336 AT5G24030.1 24280384
AT2G38910.1 OQU77636 AT5G24030.1 24280384
AT2G38910.1 OQU87187 AT5G24030.1 24280384
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d034376_P001 Maize plastid 95.56 96.38
Zm00001d013105_P004 Maize cytosol, plastid 95.21 95.38
TraesCS5B01G428700.1 Wheat cytosol 85.47 85.32
TraesCS5A01G426800.2 Wheat cytosol 85.64 82.13
TraesCS5D01G434800.2 Wheat cytosol 85.47 81.97
EER98014 Sorghum cytosol, plastid 79.49 80.03
GSMUA_Achr9P25890_001 Banana plastid 63.59 77.82
Os03t0789000-00 Rice cytosol, plasma membrane 75.38 74.87
VIT_08s0032g00780.t01 Wine grape cytosol 70.77 72.89
PGSC0003DMT400018575 Potato cytosol 66.32 71.32
Solyc10g076900.1.1 Tomato cytosol 59.83 69.86
EES09373 Sorghum cytosol, plastid 60.51 68.74
EES16732 Sorghum cytosol 60.51 68.74
PGSC0003DMT400054991 Potato cytosol 68.38 68.73
Bra000105.1-P Field mustard cytosol 66.5 68.73
CDY14419 Canola cytosol 64.62 68.73
CDY07688 Canola cytosol 64.62 68.73
AT2G38910.1 Thale cress cytosol, plastid 68.38 68.61
Solyc01g006730.2.1 Tomato cytosol 68.21 68.56
Solyc10g081640.1.1 Tomato cytosol 66.67 67.36
KRH32931 Soybean plastid 68.21 67.06
EER93328 Sorghum cytosol 70.43 66.77
KXG23457 Sorghum plastid 69.74 66.23
OQU86029 Sorghum cytosol 56.41 65.48
EES11322 Sorghum mitochondrion 60.85 64.14
OQU85618 Sorghum mitochondrion 60.68 62.83
PGSC0003DMT400072292 Potato cytosol, plastid 66.67 61.13
EER95585 Sorghum cytosol 55.73 59.93
EES01094 Sorghum cytosol, mitochondrion 52.14 58.1
EES20022 Sorghum cytosol, mitochondrion 52.65 56.93
EES01628 Sorghum cytosol 50.6 56.92
EES19734 Sorghum plastid 50.94 56.55
KXG36322 Sorghum cytosol 50.94 56.12
EES07931 Sorghum cytosol 50.09 54.46
EES12651 Sorghum cytosol 47.52 52.16
EES16538 Sorghum cytosol 51.11 52.09
EER94580 Sorghum cytosol 45.98 50.0
Protein Annotations
Gene3D:1.10.238.10Gene3D:1.10.510.10MapMan:18.4.5.4Gene3D:3.30.200.20EntrezGene:8084131UniProt:C5WY49
EnsemblPlants:EER90764ProteinID:EER90764ProteinID:EER90764.1InterPro:EF-hand-dom_pairInterPro:EF_Hand_1_Ca_BSInterPro:EF_hand_dom
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004683GO:GO:0005488
GO:GO:0005509GO:GO:0005515GO:GO:0005516GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006464GO:GO:0006468GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009719GO:GO:0009738GO:GO:0009931
GO:GO:0009987GO:GO:0016301GO:GO:0016740GO:GO:0018105GO:GO:0019538GO:GO:0035556
GO:GO:0046777InterPro:IPR000719InterPro:IPR002048InterPro:Kinase-like_dom_sfPFAM:PF00069PFAM:PF13499
ScanProsite:PS00018ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PFscan:PS50222PANTHER:PTHR24349
PANTHER:PTHR24349:SF183InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00054SMART:SM00220EnsemblPlantsGene:SORBI_3001G063300
SUPFAM:SSF47473SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASUniParc:UPI0001A8218CRefSeq:XP_002463766.1SEG:seg
Description
hypothetical protein
Coordinates
chr1:+:4722547..4726647
Molecular Weight (calculated)
64193.5 Da
IEP (calculated)
5.160
GRAVY (calculated)
-0.315
Length
585 amino acids
Sequence
(BLAST)
001: MGNTCVGPSA AGRNGFLANV TLWRPRGDDP AAAPSLPPPS SPASDKAPDP VTIPDSEHSS HHSSRSADLP PQPPTSQAHG QAQDNPPAKK PAPKVKRVQS
101: AGLLADSVLK RDVNTARLKD LYTIGKKLGQ GQFGTTYLCV EKATGREFAC KSIAKRKLLT EEDVEDVRRE IQIMHHLAGH ANVVSIVGAY EDAVAVQLVM
201: ELCAGGELFD RIIQRGHYSE KAAAQLARVI VGVVEACHSL GVMHRDLKPE NFLFVNQKED SPLKTIDFGL SIFFKPGEMF TDVVGSPYYV APEVLLKFYG
301: REVDVWSAGV IIYILLSGVP PFWDESEQGI FEQVLKGELD FSSEPWPSIS ESAKDLVRKM LIRDPKKRLT AHEALCHPWV CVDGVAPDKP LDSAVLSRLK
401: QFSAMNKLKK MALRVIAESL SEEEIAGLKE MFKMLDTDNS GHITMEELKN GLQRVGANLM DSEINALMEA ADIDNSGTID YGEFIAATLH INKVEKEDKL
501: FAAFSYFDKD GSGYITQDEL QKACEEFGIG DTRLEDIIGD IDQDNDGRID YNEFVAMMQK GDNPLGRKGH QSNANFGLGD ALKLR
Best Arabidopsis Sequence Match ( AT5G04870.1 )
(BLAST)
001: MGNTCVGPSR NGFLQSVSAA MWRPRDGDDS ASMSNGDIAS EAVSGELRSR LSDEVQNKPP EQVTMPKPGT DVETKDREIR TESKPETLEE ISLESKPETK
101: QETKSETKPE SKPDPPAKPK KPKHMKRVSS AGLRTESVLQ RKTENFKEFY SLGRKLGQGQ FGTTFLCVEK TTGKEFACKS IAKRKLLTDE DVEDVRREIQ
201: IMHHLAGHPN VISIKGAYED VVAVHLVMEC CAGGELFDRI IQRGHYTERK AAELTRTIVG VVEACHSLGV MHRDLKPENF LFVSKHEDSL LKTIDFGLSM
301: FFKPDDVFTD VVGSPYYVAP EVLRKRYGPE ADVWSAGVIV YILLSGVPPF WAETEQGIFE QVLHGDLDFS SDPWPSISES AKDLVRKMLV RDPKKRLTAH
401: QVLCHPWVQV DGVAPDKPLD SAVLSRMKQF SAMNKFKKMA LRVIAESLSE EEIAGLKEMF NMIDADKSGQ ITFEELKAGL KRVGANLKES EILDLMQAAD
501: VDNSGTIDYK EFIAATLHLN KIEREDHLFA AFTYFDKDGS GYITPDELQQ ACEEFGVEDV RIEELMRDVD QDNDGRIDYN EFVAMMQKGS ITGGPVKMGL
601: EKSFSIALKL
Arabidopsis Description
CPK1CPK1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQJ5]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.