Factsheet for PGSC0003DMT400018575

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400021864
PGSC0003DMT400051388
PGSC0003DMT400074359

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38910.1	PGSC0003DMT400021864	AT5G24030.1	24280384
AT2G38910.1	PGSC0003DMT400051388	AT5G24030.1	24280384
AT2G38910.1	PGSC0003DMT400074359	AT5G24030.1	24280384

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g076900.1.1	Tomato	cytosol	90.99	98.8
PGSC0003DMT400054991	Potato	cytosol	83.09	77.66
VIT_08s0032g00780.t01	Wine grape	cytosol	76.47	73.24
GSMUA_Achr9P25890_001	Banana	plastid	62.13	70.71
Bra000105.1-P	Field mustard	cytosol	73.16	70.32
CDY07688	Canola	cytosol	70.96	70.18
CDY14419	Canola	cytosol	70.96	70.18
AT2G38910.1	Thale cress	cytosol, plastid	74.82	69.81
KRH32931	Soybean	plastid	75.74	69.24
PGSC0003DMT400072292	Potato	cytosol, plastid	80.7	68.81
Zm00001d034376_P001	Maize	plastid	71.69	67.24
PGSC0003DMT400065419	Potato	plastid	71.14	66.61
HORVU2Hr1G058530.2	Barley	cytosol, plastid	68.93	66.37
EER90764	Sorghum	plastid	71.32	66.32
Zm00001d013105_P004	Maize	cytosol, plastid	71.14	66.27
TraesCS2D01G249900.2	Wheat	cytosol, plastid	68.38	66.19
PGSC0003DMT400002592	Potato	plastid	70.22	66.09
Os07t0161600-01	Rice	plasma membrane	68.93	66.02
TraesCS2A01G248200.3	Wheat	cytosol, plastid	68.38	65.72
TraesCS2B01G269200.3	Wheat	cytosol, plastid	68.38	65.72
TraesCS5B01G428700.1	Wheat	cytosol	68.75	63.82
EER98014	Sorghum	cytosol, plastid	68.01	63.68
PGSC0003DMT400060262	Potato	cytosol	58.27	63.02
Zm00001d007912_P009	Maize	cytosol, plastid	68.75	62.65
Os03t0789000-00	Rice	cytosol, plasma membrane	67.46	62.31
PGSC0003DMT400067082	Potato	cytosol, plastid	56.99	61.88
TraesCS5A01G426800.2	Wheat	cytosol	69.12	61.64
PGSC0003DMT400054983	Potato	cytosol	67.46	61.37
TraesCS5D01G434800.2	Wheat	cytosol	68.75	61.31
PGSC0003DMT400002331	Potato	cytosol	56.62	60.99
PGSC0003DMT400072554	Potato	cytosol	66.36	59.47
PGSC0003DMT400043320	Potato	cytosol, plastid	61.58	59.08
PGSC0003DMT400024436	Potato	cytosol	53.68	55.73
PGSC0003DMT400014939	Potato	plastid	52.76	55.51
PGSC0003DMT400071663	Potato	cytosol, plasma membrane	50.18	53.63
PGSC0003DMT400011823	Potato	cytosol	52.57	53.46
PGSC0003DMT400057484	Potato	cytosol	50.0	52.21
PGSC0003DMT400025581	Potato	cytosol	50.18	50.56

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.510.10	EntrezGene:102596522	MapMan:18.4.5.4	Gene3D:3.30.200.20	ncoils:Coil
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005509	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	InterPro:IPR002048	InterPro:Kinase-like_dom_sf	UniProt:M1AAW2	PFAM:PF00069	PFAM:PF13499
EnsemblPlantsGene:PGSC0003DMG401007209	PGSC:PGSC0003DMG401007209	EnsemblPlants:PGSC0003DMT400018575	ScanProsite:PS00018	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PFscan:PS50222	PANTHER:PTHR24349	PANTHER:PTHR24349:SF81	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00054	SMART:SM00220	SUPFAM:SSF47473	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000294F905
RefSeq:XP_006364742.1	SEG:seg	:	:	:	:

Description

Calcium dependent protein kinase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG401007209]

Coordinates

chr10:-:59665323..59670010

Molecular Weight (calculated)

60372.9 Da

IEP (calculated)

5.159

GRAVY (calculated)

-0.411

Length

544 amino acids

Sequence
(BLAST)

001: MGNTCSGPTL NKDSADSSKT DGKGSDSNNV QNTPPPHLQI PGDQDEKSTN SQNGDDIVVE DVKRNNSSNL KRVMSAGLQV DTVLGRKTGN LKDIYTLGRK
101: LGQGQFGTTF SCVDKAQQKE FACKSIAKRK LTTEEDVEDV RREIQIMHHL AGHPSVVQIV GAYEDAVAVH VVMELCAGGE LFDRIIKRGH YSEKKAAELA
201: RVIVGVVEAC HSLGVMHRDL KPENFLFVNE KEESSLKTID FGLSVFFRPG ETFTDVVGSP YYVAPEVLRK RYGPECDIWS AGVIIYILLS GVPPFWDETE
301: QGIFEQIVKG ELDLVSEPWP AISESAKDLV RKMLVRDPKK RLTAHEVLCH PWVRVGGVAP DKPLDSAVLS RLNQFSAMNK LKKIAIRVIA ENLSGEEIAG
401: LKQMFKMIDA DNSGHITLEE LKKGLEKVGS KLKDSEINSL MQAADMDNSG TIDYGEFIAA MLHLNKVQKE DHMYAAFSYF DQDGSGYITQ EELQQACEKF
501: GLSNIPMEEL MREVDQDNDG RIDYNEFVAM MQDTGFGKNG NKRV

Best Arabidopsis Sequence Match ( AT2G38910.1 )
(BLAST)

001: MGNTCVGPNL NPNGFLQSVS AAVWRNQKPD DSIKSSKDES SRKKNDKSVN GDDSNGHVSS TVDPAPSTLP TPSTPPPPVK MANEEPPPKP ITENKEDPNS
101: KPQKKEAHMK RMASAGLQID SVLGRKTENL KDIYSVGRKL GQGQFGTTFL CVDKKTGKEF ACKTIAKRKL TTPEDVEDVR REIQIMHHLS GHPNVIQIVG
201: AYEDAVAVHV VMEICAGGEL FDRIIQRGHY TEKKAAELAR IIVGVIEACH SLGVMHRDLK PENFLFVSGD EEAALKTIDF GLSVFFKPGE TFTDVVGSPY
301: YVAPEVLRKH YSHECDVWSA GVIIYILLSG VPPFWDETEQ GIFEQVLKGD LDFISEPWPS VSESAKDLVR RMLIRDPKKR MTTHEVLCHP WARVDGVALD
401: KPLDSAVLSR LQQFSAMNKL KKIAIKVIAE SLSEEEIAGL KEMFKMIDTD NSGHITLEEL KKGLDRVGAD LKDSEILGLM QAADIDNSGT IDYGEFIAAM
501: VHLNKIEKED HLFTAFSYFD QDGSGYITRD ELQQACKQFG LADVHLDDIL REVDKDNDGR IDYSEFVDMM QDTGFGKMGL KVS

Arabidopsis Description

CPK20CPK20 [Source:UniProtKB/TrEMBL;Acc:A0A178VWI7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.