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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 2
  • plastid 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plastid, vacuole
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:vacuole
YLoc:cytosol
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0226600-02
Os01t0385400-01
Os01t0623200-01
Os05t0219900-01
Os07t0181100-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38910.1 Os01t0226600-02 AT5G24030.1 24280384
AT2G38910.1 Os01t0385400-01 AT5G24030.1 24280384
AT2G38910.1 Os01t0623200-01 AT5G24030.1 24280384
AT2G38910.1 Os05t0219900-01 AT5G24030.1 24280384
AT2G38910.1 Os07t0181100-01 AT5G24030.1 24280384
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G249900.2 Wheat cytosol, plastid 88.03 88.97
HORVU2Hr1G058530.2 Barley cytosol, plastid 88.38 88.85
TraesCS2B01G269200.3 Wheat cytosol, plastid 87.85 88.16
TraesCS2A01G248200.3 Wheat cytosol, plastid 87.85 88.16
EER98014 Sorghum cytosol, plastid 87.5 85.54
Zm00001d007912_P009 Maize cytosol, plastid 86.8 82.58
GSMUA_Achr9P25890_001 Banana plastid 65.49 77.82
VIT_08s0032g00780.t01 Wine grape cytosol 71.13 71.13
Os03t0789000-00 Rice cytosol, plasma membrane 72.89 70.29
PGSC0003DMT400018575 Potato cytosol 66.02 68.93
Solyc10g076900.1.1 Tomato cytosol 59.15 67.07
PGSC0003DMT400054991 Potato cytosol 68.66 67.01
Bra000105.1-P Field mustard cytosol 66.55 66.78
Os03t0788500-01 Rice cytosol 70.42 66.78
CDY07688 Canola cytosol 64.61 66.73
CDY14419 Canola cytosol 64.61 66.73
Solyc01g006730.2.1 Tomato cytosol 68.31 66.67
AT2G38910.1 Thale cress cytosol, plastid 67.43 65.69
Os11t0171500-01 Rice plasma membrane 59.33 65.69
Solyc10g081640.1.1 Tomato cytosol 66.37 65.11
KRH32931 Soybean plastid 67.61 64.54
Os12t0169800-00 Rice plasma membrane 59.33 64.07
Os04t0584600-02 Rice mitochondrion 61.27 63.16
Os02t0832000-01 Rice plasma membrane 58.98 61.47
PGSC0003DMT400072292 Potato cytosol, plastid 66.37 59.09
Os01t0622600-01 Rice plasma membrane 52.99 58.11
Os01t0808400-01 Rice plasma membrane 51.76 57.09
Os05t0585500-01 Rice plasma membrane 52.11 54.61
Os07t0515100-01 Rice cytosol 51.06 54.41
Os11t0136600-00 Rice extracellular 51.76 54.34
Os10t0539600-01 Rice nucleus 50.35 53.56
Os04t0560600-01 Rice plasma membrane 47.89 51.03
Os12t0486600-00 Rice plasma membrane 67.08 49.42
Protein Annotations
Gene3D:1.10.238.10Gene3D:1.10.510.10MapMan:18.4.5.4Gene3D:3.30.200.20EntrezGene:4342456ProteinID:BAC79646.1
ProteinID:BAF20857.1ProteinID:BAT00166.1InterPro:EF-hand-dom_pairInterPro:EF_Hand_1_Ca_BSInterPro:EF_hand_domGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004674GO:GO:0004683GO:GO:0005488
GO:GO:0005509GO:GO:0005515GO:GO:0005516GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006464GO:GO:0006468GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009719GO:GO:0009738GO:GO:0009931
GO:GO:0009987GO:GO:0016020GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0018105
GO:GO:0019538GO:GO:0035556GO:GO:0046777GO:GO:0046872InterPro:IPR000719InterPro:IPR002048
InterPro:Kinase-like_dom_sfEnsemblPlantsGene:Os07g0161600EnsemblPlants:Os07t0161600-01PFAM:PF00069PFAM:PF13499ScanProsite:PS00018
ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PFscan:PS50222PANTHER:PTHR24349PANTHER:PTHR24349:SF183
InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSUniProt:Q7XIM0SMART:SM00054SMART:SM00220SUPFAM:SSF47473
SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASUniParc:UPI00001B39A1RefSeq:XP_015647496.1RefSeq:XP_015647497.1SEG:seg
Description
CALCIUM-DEPENDENT PROTEIN KINASE 17Calcium-dependent protein kinase, Cold stress response (Os07t0161600-01)
Coordinates
chr7:-:3288480..3293291
Molecular Weight (calculated)
62622.5 Da
IEP (calculated)
5.756
GRAVY (calculated)
-0.331
Length
568 amino acids
Sequence
(BLAST)
001: MGNTCVGPSS AADRHGFFHS VSLAVLWRPG GRAEPSQPPG YPPRESSHSS VTSSTAPERV TIADSDLSSS TPNKGGNKPK VRRVQSAGLL ADSVLKRDSE
101: RLKDLYTLGK KLGQGQFGTT YQCVEKATGK VLACKSIAKR KLVSEEDVED VRREIQIMHH LAGHPSVVSI VGAYEDAVAV HLVMELCAGG ELFDRIVQRG
201: HYSEKAAAQL ARVIIGVVEA CHSLGVMHRD LKPENFLFVN HKEDSPLKTI DFGLSIFFKP GENYSDVVGS PYYVAPEVLM KHYGREVDVW SAGVIIYILL
301: SGVPPFWDES EQGIFEKVLK GDLDFSSDPW PAISDSAKDL VRKMLNRDPR KRLTAHEALC HPWVCVDGVA PDKPLDSAVL TRLKQFSAMN KLKKMALRVI
401: AENLSEDEIA GLREMFKMLD TDNSGQITLE ELKTGLRRVG ANLKDSEITT LMEAADIDNS GSIDYGEFIA ATMHLNKVER EDNLFAAFSY FDKDSSGYIT
501: QDELQKACEE FGIGDAHLED IIKDIDQDND GRIDYNEFVT MMQKGNNPLG KKGQGQLSFG LREALKLG
Best Arabidopsis Sequence Match ( AT5G04870.1 )
(BLAST)
001: MGNTCVGPSR NGFLQSVSAA MWRPRDGDDS ASMSNGDIAS EAVSGELRSR LSDEVQNKPP EQVTMPKPGT DVETKDREIR TESKPETLEE ISLESKPETK
101: QETKSETKPE SKPDPPAKPK KPKHMKRVSS AGLRTESVLQ RKTENFKEFY SLGRKLGQGQ FGTTFLCVEK TTGKEFACKS IAKRKLLTDE DVEDVRREIQ
201: IMHHLAGHPN VISIKGAYED VVAVHLVMEC CAGGELFDRI IQRGHYTERK AAELTRTIVG VVEACHSLGV MHRDLKPENF LFVSKHEDSL LKTIDFGLSM
301: FFKPDDVFTD VVGSPYYVAP EVLRKRYGPE ADVWSAGVIV YILLSGVPPF WAETEQGIFE QVLHGDLDFS SDPWPSISES AKDLVRKMLV RDPKKRLTAH
401: QVLCHPWVQV DGVAPDKPLD SAVLSRMKQF SAMNKFKKMA LRVIAESLSE EEIAGLKEMF NMIDADKSGQ ITFEELKAGL KRVGANLKES EILDLMQAAD
501: VDNSGTIDYK EFIAATLHLN KIEREDHLFA AFTYFDKDGS GYITPDELQQ ACEEFGVEDV RIEELMRDVD QDNDGRIDYN EFVAMMQKGS ITGGPVKMGL
601: EKSFSIALKL
Arabidopsis Description
CPK1CPK1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQJ5]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.