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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 2
  • cytosol 3
  • mitochondrion 1
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:extracellular
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
EES20021
KXG22628
KXG22629
KXG24404
KXG28459
KXG31512
OQU77336
OQU77636
OQU87187

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G10660.1 EES20021 AT5G24030.1 24280384
AT3G10660.1 KXG22628 AT5G24030.1 24280384
AT3G10660.1 KXG22629 AT5G24030.1 24280384
AT3G10660.1 KXG24404 AT5G24030.1 24280384
AT3G10660.1 KXG28459 AT5G24030.1 24280384
AT3G10660.1 KXG31512 AT5G24030.1 24280384
AT3G10660.1 OQU77336 AT5G24030.1 24280384
AT3G10660.1 OQU77636 AT5G24030.1 24280384
AT3G10660.1 OQU87187 AT5G24030.1 24280384
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d034372_P001 Maize cytosol 92.22 92.97
Os03t0788500-01 Rice cytosol 86.22 88.81
Zm00001d013109_P002 Maize plasma membrane 87.68 87.26
TraesCS5D01G434500.2 Wheat cytosol 84.44 83.49
TraesCS5A01G426500.1 Wheat cytosol 84.77 83.41
TraesCS5B01G428400.2 Wheat cytosol 84.6 83.25
GSMUA_Achr7P07810_001 Banana cytosol, plastid 65.48 80.32
VIT_13s0175g00080.t01 Wine grape cytosol, plastid 71.64 77.68
Solyc11g006370.1.1 Tomato plastid 71.96 76.82
PGSC0003DMT400002592 Potato plastid 71.47 76.3
PGSC0003DMT400065419 Potato plastid 70.99 75.39
Solyc04g009800.2.1 Tomato cytosol, plastid 70.83 75.22
KRG90147 Soybean cytosol, plastid 69.85 74.44
KRH33395 Soybean endoplasmic reticulum, nucleus 69.53 73.84
CDX70192 Canola cytosol, plastid 68.23 73.6
CDX98791 Canola cytosol, plastid 68.07 73.3
CDX80925 Canola cytosol 67.26 72.43
Bra009420.1-P Field mustard cytosol, plastid 68.88 71.91
Solyc10g081740.1.1 Tomato cytosol 58.02 71.74
CDY08584 Canola cytosol 66.94 71.7
CDY11313 Canola cytosol 67.91 71.26
KRH72128 Soybean plastid 67.75 71.21
CDY00963 Canola plastid 66.13 71.08
VIT_08s0032g01220.t01 Wine grape cytosol 66.77 71.03
EER98014 Sorghum cytosol, plastid 66.45 70.57
EER90764 Sorghum plastid 66.77 70.43
AT5G04870.1 Thale cress cytosol, plastid 69.37 70.16
KXG23457 Sorghum plastid 69.37 69.48
Bra005824.1-P Field mustard cytosol, plastid 67.91 69.14
CDX73914 Canola plastid 66.94 68.95
CDY00688 Canola plastid 66.45 68.33
EES16732 Sorghum cytosol 56.4 67.57
EES09373 Sorghum cytosol, plastid 55.75 66.8
PGSC0003DMT400054983 Potato cytosol 64.18 66.22
Solyc01g006840.2.1 Tomato cytosol 63.86 65.89
KRH68038 Soybean cytosol 62.24 65.08
AT3G10660.1 Thale cress cytosol, plastid 67.91 64.86
PGSC0003DMT400072554 Potato cytosol 63.53 64.58
OQU86029 Sorghum cytosol 52.19 63.89
KRG96293 Soybean cytosol 61.26 63.74
EES11322 Sorghum mitochondrion 56.4 62.7
OQU85618 Sorghum mitochondrion 55.92 61.06
EES01094 Sorghum cytosol, mitochondrion 50.41 59.24
EER95585 Sorghum cytosol 52.03 59.01
KXG36322 Sorghum cytosol 50.41 58.57
EES01628 Sorghum cytosol 48.14 57.12
EES07931 Sorghum cytosol 49.59 56.88
EES20022 Sorghum cytosol, mitochondrion 49.43 56.38
EES19734 Sorghum plastid 48.14 56.36
EES12651 Sorghum cytosol 47.49 54.97
EES16538 Sorghum cytosol 49.76 53.48
EER94580 Sorghum cytosol 44.41 50.93
Bra029859.1-P Field mustard plastid 67.26 43.68
Bra001373.1-P Field mustard plastid 67.91 43.2
CDY00964 Canola plastid 0.49 0.9
CDY00689 Canola plastid 0.32 0.6
Protein Annotations
Gene3D:1.10.238.10Gene3D:1.10.510.10MapMan:18.4.5.4Gene3D:3.30.200.20UniProt:C5WY52EnsemblPlants:EER93328
ProteinID:EER93328ProteinID:EER93328.1InterPro:EF-hand-dom_pairInterPro:EF_Hand_1_Ca_BSInterPro:EF_hand_domGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004683GO:GO:0005488GO:GO:0005509
GO:GO:0005515GO:GO:0005516GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005737GO:GO:0006464GO:GO:0006468GO:GO:0007154GO:GO:0007165
GO:GO:0008150GO:GO:0008152GO:GO:0009719GO:GO:0009738GO:GO:0009931GO:GO:0009987
GO:GO:0016301GO:GO:0016740GO:GO:0018105GO:GO:0019538GO:GO:0035556GO:GO:0046777
InterPro:IPR000719InterPro:IPR002048InterPro:Kinase-like_dom_sfPFAM:PF00069PFAM:PF13499ScanProsite:PS00018
ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PFscan:PS50222PANTHER:PTHR24349PANTHER:PTHR24349:SF164
InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00054SMART:SM00220EnsemblPlantsGene:SORBI_3001G063600SUPFAM:SSF47473
SUPFAM:SSF56112unigene:Sbi.5348InterPro:Ser/Thr_kinase_ASUniParc:UPI0001A82BC6RefSeq:XP_002466330.1SEG:seg
Description
hypothetical protein
Coordinates
chr1:-:4771823..4776573
Molecular Weight (calculated)
67535.9 Da
IEP (calculated)
6.265
GRAVY (calculated)
-0.291
Length
617 amino acids
Sequence
(BLAST)
001: MGNTCVGPSI TKNGFFQSVS TALWKTPQDG DALPAATAAN GPGGASPGRS QSMPPPKPAS DVHVAVQSKA PEPVKIAVSY SEPPPKAAAA TQDAKPANTK
101: ANANANASPS PNSSAEAPPK PRPKVPQVKR VSSAGLLVGS VLKRKTENLK DKYSLGRRLG QGQFGTTYLC VERATGKEYA CKSILKRKLV TDDDVEDVRR
201: EIQIMYHLAG HPNVISIRGA YEDAVAVHLV MELCAGGELF DRIVQKGHYT ERKAAELARV IVGVVEVCHS MGVMHRDLKP ENFLFADQKE EAALKTIDFG
301: LSIFFRPGQI FTDVVGSPYY VAPEVLKKKY GPEADVWSAG VIIYILLCGV PPFWAENEQG IFEEVLHGRL DFESEPWPSI SEGAKDLVRR MLIRDPRKRL
401: TAHEVLRHPW VQVGGLAPDK PLDSAVLSRM KQFSAMNKLK KMALRVIAEN LSEDEIAGLK EMFKMIDADN SGQITFEELK VGLKKVGANL QESEIYALMQ
501: AADVDNNGTI DYGEFLAATL HLNKVEREDH LFAAFQYFDK DGSGYITADE LQVACEEFGL GDVKLEDMIG EVDQDNDGRI DYNEFVAMMQ KPTVGLPKKA
601: GLQNSFSIGF REALRMA
Best Arabidopsis Sequence Match ( AT5G04870.1 )
(BLAST)
001: MGNTCVGPSR NGFLQSVSAA MWRPRDGDDS ASMSNGDIAS EAVSGELRSR LSDEVQNKPP EQVTMPKPGT DVETKDREIR TESKPETLEE ISLESKPETK
101: QETKSETKPE SKPDPPAKPK KPKHMKRVSS AGLRTESVLQ RKTENFKEFY SLGRKLGQGQ FGTTFLCVEK TTGKEFACKS IAKRKLLTDE DVEDVRREIQ
201: IMHHLAGHPN VISIKGAYED VVAVHLVMEC CAGGELFDRI IQRGHYTERK AAELTRTIVG VVEACHSLGV MHRDLKPENF LFVSKHEDSL LKTIDFGLSM
301: FFKPDDVFTD VVGSPYYVAP EVLRKRYGPE ADVWSAGVIV YILLSGVPPF WAETEQGIFE QVLHGDLDFS SDPWPSISES AKDLVRKMLV RDPKKRLTAH
401: QVLCHPWVQV DGVAPDKPLD SAVLSRMKQF SAMNKFKKMA LRVIAESLSE EEIAGLKEMF NMIDADKSGQ ITFEELKAGL KRVGANLKES EILDLMQAAD
501: VDNSGTIDYK EFIAATLHLN KIEREDHLFA AFTYFDKDGS GYITPDELQQ ACEEFGVEDV RIEELMRDVD QDNDGRIDYN EFVAMMQKGS ITGGPVKMGL
601: EKSFSIALKL
Arabidopsis Description
CPK1CPK1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQJ5]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.