Factsheet for VIT_13s0175g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0050g01860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10660.1	VIT_16s0050g01860.t01	AT5G24030.1	24280384

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002592	Potato	plastid	85.41	84.08
Solyc11g006370.1.1	Tomato	plastid	85.41	84.08
KRG90147	Soybean	cytosol, plastid	85.24	83.77
KRH33395	Soybean	endoplasmic reticulum, nucleus	85.06	83.3
PGSC0003DMT400065419	Potato	plastid	83.83	82.1
Solyc04g009800.2.1	Tomato	cytosol, plastid	83.83	82.1
GSMUA_Achr7P07810_001	Banana	cytosol, plastid	71.0	80.32
CDX70192	Canola	cytosol, plastid	80.67	80.24
CDX98791	Canola	cytosol, plastid	80.49	79.93
Bra009420.1-P	Field mustard	cytosol, plastid	81.72	78.68
CDX80925	Canola	cytosol	78.91	78.36
CDY08584	Canola	cytosol	79.09	78.12
CDY11313	Canola	cytosol	80.67	78.06
GSMUA_AchrUn_...	Banana	cytosol	76.8	77.76
AT5G04870.1	Thale cress	cytosol, plastid	82.78	77.21
CDY00963	Canola	plastid	77.33	76.66
Bra005824.1-P	Field mustard	cytosol, plastid	81.37	76.4
VIT_08s0032g01220.t01	Wine grape	cytosol	77.5	76.03
CDX73914	Canola	plastid	79.79	75.79
VIT_08s0032g00780.t01	Wine grape	cytosol	74.87	75.0
CDY00688	Canola	plastid	79.09	75.0
Os03t0788500-01	Rice	cytosol	77.15	73.29
Zm00001d034372_P001	Maize	cytosol	77.33	71.9
EER93328	Sorghum	cytosol	77.68	71.64
AT3G10660.1	Thale cress	cytosol, plastid	80.67	71.05
TraesCS5D01G434500.2	Wheat	cytosol	76.98	70.19
Zm00001d040996_P003	Maize	plastid	74.69	69.79
VIT_18s0072g01030.t01	Wine grape	cytosol, mitochondrion	59.93	69.73
TraesCS5A01G426500.1	Wheat	cytosol	76.8	69.7
TraesCS5B01G428400.2	Wheat	cytosol	76.8	69.7
KXG23457	Sorghum	plastid	75.4	69.64
VIT_07s0130g00130.t01	Wine grape	cytosol	60.63	69.42
Zm00001d013109_P002	Maize	plasma membrane	75.22	69.03
GSMUA_Achr4P22740_001	Banana	cytosol, plastid	77.86	68.79
TraesCS5B01G109300.1	Wheat	plastid	75.22	68.59
TraesCS5D01G124000.1	Wheat	plastid	75.04	68.43
GSMUA_Achr7P01360_001	Banana	cytosol	76.98	65.28
HORVU5Hr1G030810.1	Barley	cytosol	75.4	62.26
VIT_03s0038g03960.t01	Wine grape	cytosol	66.08	62.25
VIT_02s0025g00690.t01	Wine grape	cytosol	54.48	58.71
VIT_06s0009g03150.t01	Wine grape	cytosol	54.48	58.05
VIT_10s0116g01800.t01	Wine grape	cytosol	51.32	56.81
VIT_19s0090g00410.t01	Wine grape	cytosol	52.9	56.16
VIT_18s0001g00990.t01	Wine grape	plastid	51.14	55.64
Os12t0486600-00	Rice	plasma membrane	71.88	53.05
Bra001373.1-P	Field mustard	plastid	80.84	47.42
Bra029859.1-P	Field mustard	plastid	79.09	47.37
CDY00964	Canola	plastid	0.53	0.9
CDY00689	Canola	plastid	0.35	0.6

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.510.10	EntrezGene:100249224	wikigene:100249224	MapMan:18.4.5.4	Gene3D:3.30.200.20
EMBL:AM452547	ProteinID:CAN67710	ProteinID:CAN67710.1	ProteinID:CCB62773	ProteinID:CCB62773.1	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	UniProt:F6I755	EMBL:FN596766	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004683	GO:GO:0005488	GO:GO:0005509	GO:GO:0005515
GO:GO:0005516	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009719	GO:GO:0009738	GO:GO:0009931	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0018105	GO:GO:0019538	GO:GO:0035556	GO:GO:0046777	InterPro:IPR000719
InterPro:IPR002048	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100249224	wikigene:LOC100249224	PFAM:PF00069	PFAM:PF13499
ScanProsite:PS00018	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS50222	PANTHER:PTHR24349
PANTHER:PTHR24349:SF161	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00054	SMART:SM00220	SUPFAM:SSF47473
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI00015CC893	ArrayExpress:VIT_13s0175g00080	EnsemblPlantsGene:VIT_13s0175g00080	EnsemblPlants:VIT_13s0175g00080.t01
unigene:Vvi.7165	RefSeq:XP_002265450	RefSeq:XP_002265450.1	RefSeq:XP_010658917.1	SEG:seg	:

Description

No Description!

Coordinates

chr13:-:14945268..14952140

Molecular Weight (calculated)

63748.1 Da

IEP (calculated)

5.345

GRAVY (calculated)

-0.389

Length

569 amino acids

Sequence
(BLAST)

001: MGNTCVGPSI SKNGFFQSVS AAMWRSRAPE GSASYTNGET MDEPQATTKE PGSPLPVQNK PPEQMTIPKE EQPTKPKKPH QIKRVSSAGL RIESVLQTKT
101: GNFKEFFILG RKLGQGQFGT TFLCVQKATR KEYACKSIAK RKLLTDEDVE DVRREIQIMH HLAGHPNVIS IEGAYEDAVA VHVVMELCKG GELFDRIIQH
201: GHYTERKAAE LTRTIVGVVE ACHSLGVMHR DLKPENFLLV NEEEDSLLKT IDFGLSVFFK PGEKFTDVVG SPYYVAPEVL RKRYGPEADV WSAGVILYIL
301: LSGVPPFWAE TEQGIFEQVL HGDLDFSSDP WPSISESAKD LVRRMLVRDP RRRLTAHEVL CHPWVQVDGV APDKPLDSAV LSRLKQFSAM NKLKKMALIV
401: IAENLSEEEI AGLKEMFKMI DTDNSGQITF EELKAGLKRV GANLKESEIY DLMHAADVDN NGTIDYGEFI AATLHLNKVE REDHLFAAFS YFDKDGSGYI
501: TPDELQQACE EFGLEDVRLE EMIREVDQDN DGRIDYNEFV AMMQKGNPGI GKKGLQTSFS MGFREALKH

Best Arabidopsis Sequence Match ( AT5G04870.1 )
(BLAST)

001: MGNTCVGPSR NGFLQSVSAA MWRPRDGDDS ASMSNGDIAS EAVSGELRSR LSDEVQNKPP EQVTMPKPGT DVETKDREIR TESKPETLEE ISLESKPETK
101: QETKSETKPE SKPDPPAKPK KPKHMKRVSS AGLRTESVLQ RKTENFKEFY SLGRKLGQGQ FGTTFLCVEK TTGKEFACKS IAKRKLLTDE DVEDVRREIQ
201: IMHHLAGHPN VISIKGAYED VVAVHLVMEC CAGGELFDRI IQRGHYTERK AAELTRTIVG VVEACHSLGV MHRDLKPENF LFVSKHEDSL LKTIDFGLSM
301: FFKPDDVFTD VVGSPYYVAP EVLRKRYGPE ADVWSAGVIV YILLSGVPPF WAETEQGIFE QVLHGDLDFS SDPWPSISES AKDLVRKMLV RDPKKRLTAH
401: QVLCHPWVQV DGVAPDKPLD SAVLSRMKQF SAMNKFKKMA LRVIAESLSE EEIAGLKEMF NMIDADKSGQ ITFEELKAGL KRVGANLKES EILDLMQAAD
501: VDNSGTIDYK EFIAATLHLN KIEREDHLFA AFTYFDKDGS GYITPDELQQ ACEEFGVEDV RIEELMRDVD QDNDGRIDYN EFVAMMQKGS ITGGPVKMGL
601: EKSFSIALKL

Arabidopsis Description

CPK1CPK1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQJ5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.