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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • plastid 5
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
 plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g007770.2.1
Solyc06g036440.1.1
Solyc09g014610.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G10660.1 Solyc03g007770.2.1 AT5G24030.1 24280384
AT3G10660.1 Solyc06g036440.1.1 AT5G24030.1 24280384
AT3G10660.1 Solyc09g014610.2.1 AT5G24030.1 24280384
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400002592 Potato plastid 98.62 98.62
Solyc04g009800.2.1 Tomato cytosol, plastid 86.68 86.23
VIT_13s0175g00080.t01 Wine grape cytosol, plastid 84.08 85.41
KRG90147 Soybean cytosol, plastid 82.18 82.04
KRH33395 Soybean endoplasmic reticulum, nucleus 81.83 81.41
GSMUA_Achr7P07810_001 Banana cytosol, plastid 69.38 79.72
CDX70192 Canola cytosol, plastid 78.89 79.72
CDX98791 Canola cytosol, plastid 78.72 79.41
CDX80925 Canola cytosol 77.85 78.53
Bra009420.1-P Field mustard cytosol, plastid 79.93 78.17
CDY11313 Canola cytosol 79.41 78.06
AT5G04870.1 Thale cress cytosol, plastid 80.97 76.72
GSMUA_AchrUn_... Banana cytosol 74.39 76.51
Bra005824.1-P Field mustard cytosol, plastid 79.93 76.24
CDY08584 Canola cytosol 75.95 76.22
CDY00963 Canola plastid 75.09 75.61
Solyc10g081740.1.1 Tomato cytosol 64.36 74.55
Os03t0788500-01 Rice cytosol 76.64 73.96
CDY00688 Canola plastid 76.64 73.83
CDX73914 Canola plastid 76.47 73.79
Zm00001d034372_P001 Maize cytosol 76.3 72.06
EER93328 Sorghum cytosol 76.82 71.96
TraesCS5D01G434500.2 Wheat cytosol 76.12 70.51
Solyc01g006840.2.1 Tomato cytosol 72.49 70.07
TraesCS5A01G426500.1 Wheat cytosol 75.95 70.02
TraesCS5B01G428400.2 Wheat cytosol 75.78 69.86
AT3G10660.1 Thale cress cytosol, plastid 77.68 69.5
Solyc10g076900.1.1 Tomato cytosol 59.86 69.06
Zm00001d013109_P002 Maize plasma membrane 74.05 69.03
Zm00001d040996_P003 Maize plastid 71.8 68.14
GSMUA_Achr4P22740_001 Banana cytosol, plastid 75.43 67.7
KXG23457 Sorghum plastid 71.97 67.53
Solyc01g006730.2.1 Tomato cytosol 67.99 67.53
Solyc01g112250.2.1 Tomato cytosol 62.28 67.42
Solyc10g081640.1.1 Tomato cytosol 66.61 66.49
Solyc04g049160.2.1 Tomato cytosol 57.96 65.94
TraesCS5B01G109300.1 Wheat plastid 70.59 65.38
Solyc06g065380.2.1 Tomato cytosol, plastid 57.27 65.29
TraesCS5D01G124000.1 Wheat plastid 70.42 65.22
Solyc11g018610.1.1 Tomato cytosol 56.92 65.15
Solyc10g074570.1.1 Tomato cytosol, plastid 62.63 64.99
Solyc05g056570.2.1 Tomato cytosol 55.88 64.21
GSMUA_Achr7P01360_001 Banana cytosol 73.18 63.04
Solyc08g008170.2.1 Tomato plastid 53.63 60.08
HORVU5Hr1G030810.1 Barley cytosol 70.42 59.07
Solyc12g005040.1.1 Tomato cytosol 10.21 57.28
Solyc11g064900.1.1 Tomato cytosol 51.73 56.52
Solyc12g099790.1.1 Tomato cytosol 52.25 56.45
Solyc07g064610.2.1 Tomato nucleus 50.87 56.43
Solyc01g008740.1.1 Tomato cytosol 52.42 56.01
Solyc04g081910.2.1 Tomato cytosol, plastid 49.83 55.28
Solyc02g032820.2.1 Tomato cytosol, plastid 40.66 54.78
Solyc03g031670.2.1 Tomato cytosol 52.08 54.43
Os12t0486600-00 Rice plasma membrane 68.51 51.36
Bra029859.1-P Field mustard plastid 76.3 46.42
Bra001373.1-P Field mustard plastid 77.85 46.39
CDY00964 Canola plastid 0.52 0.9
CDY00689 Canola plastid 0.35 0.6
Protein Annotations
Gene3D:1.10.238.10Gene3D:1.10.510.10MapMan:18.4.5.4Gene3D:3.30.200.20InterPro:EF-hand-dom_pairInterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_domGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004683
GO:GO:0005488GO:GO:0005509GO:GO:0005515GO:GO:0005516GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006464GO:GO:0006468
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009719GO:GO:0009738
GO:GO:0009931GO:GO:0009987GO:GO:0016301GO:GO:0016740GO:GO:0018105GO:GO:0019538
GO:GO:0035556GO:GO:0046777InterPro:IPR000719InterPro:IPR002048UniProt:K4D4Q0InterPro:Kinase-like_dom_sf
PFAM:PF00069PFAM:PF13499ScanProsite:PS00018ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011
PFscan:PS50222PANTHER:PTHR24349PANTHER:PTHR24349:SF161InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00054
SMART:SM00220SUPFAM:SSF47473SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASEnsemblPlantsGene:Solyc11g006370.1EnsemblPlants:Solyc11g006370.1.1
UniParc:UPI0002769DC9SEG:seg::::
Description
No Description!
Coordinates
chr11:+:1080169..1085490
Molecular Weight (calculated)
64684.2 Da
IEP (calculated)
5.372
GRAVY (calculated)
-0.442
Length
578 amino acids
Sequence
(BLAST)
001: MGNTCVGPSI SKNGIFQSVS AAMWRSRSPD DTASTVTNGE SGRVETPTSA KETESPLPVQ DKPPEPMTMP KLEEKEEEKP KKPKKPAEMK RVSSAGLRTD
101: SVLQKKTGNL KEFFSIGKKL GQGQFGTTFL CTEKATGKRY ACKSIAKRKL LTDDDVEDVR REVQIMHHLA GHPHVISIKG AYEDAVAVHL VMEYCAGGEL
201: FDRIIQRGHY TERKAAELTR TIVGVVEACH SLGVMHRDLK PENFLFVDQK EESLLKTIDF GLSIFFKPGD KFTDVVGSPY YVAPEVLRKR YGPEADVWSA
301: GVIIYILLSG VPPFWAENEQ GIFEQVLHGD LDFTTDPWPS ISEDAKDLMR RMLIRDPRKR LTAHEVLCHP WVQVDGVAPD KPLDSAVLSR MKQFSAMNKL
401: KKMALRVIAE SLSEEEIAGL KEMFRMIDTD NSGQITFEEL KDGLKRFGSN LKESEIYDLM QAADVDNSGT IDYGEFIAAT LHLNKIERDD HLFAAFSYFD
501: KDGSGYITAD ELQHACEEFG IGDVRMEEMI READQDNDGR IDYNEFVAMM QKGNPVLGGG KKGLEQSFSI GFREALKL
Best Arabidopsis Sequence Match ( AT5G04870.1 )
(BLAST)
001: MGNTCVGPSR NGFLQSVSAA MWRPRDGDDS ASMSNGDIAS EAVSGELRSR LSDEVQNKPP EQVTMPKPGT DVETKDREIR TESKPETLEE ISLESKPETK
101: QETKSETKPE SKPDPPAKPK KPKHMKRVSS AGLRTESVLQ RKTENFKEFY SLGRKLGQGQ FGTTFLCVEK TTGKEFACKS IAKRKLLTDE DVEDVRREIQ
201: IMHHLAGHPN VISIKGAYED VVAVHLVMEC CAGGELFDRI IQRGHYTERK AAELTRTIVG VVEACHSLGV MHRDLKPENF LFVSKHEDSL LKTIDFGLSM
301: FFKPDDVFTD VVGSPYYVAP EVLRKRYGPE ADVWSAGVIV YILLSGVPPF WAETEQGIFE QVLHGDLDFS SDPWPSISES AKDLVRKMLV RDPKKRLTAH
401: QVLCHPWVQV DGVAPDKPLD SAVLSRMKQF SAMNKFKKMA LRVIAESLSE EEIAGLKEMF NMIDADKSGQ ITFEELKAGL KRVGANLKES EILDLMQAAD
501: VDNSGTIDYK EFIAATLHLN KIEREDHLFA AFTYFDKDGS GYITPDELQQ ACEEFGVEDV RIEELMRDVD QDNDGRIDYN EFVAMMQKGS ITGGPVKMGL
601: EKSFSIALKL
Arabidopsis Description
CPK1CPK1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQJ5]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.