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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • cytosol 5
  • nucleus 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400025581 Potato cytosol 96.93 93.52
Bra015796.1-P Field mustard cytosol, plastid 74.09 73.24
VIT_18s0001g00990.t01 Wine grape plastid 73.13 72.85
CDY66815 Canola cytosol, plastid 74.09 69.93
CDX73219 Canola cytosol, mitochondrion 73.51 69.38
KRH17481 Soybean cytosol 71.21 69.09
AT1G76040.2 Thale cress cytosol 73.9 68.63
Solyc07g064610.2.1 Tomato nucleus 65.83 65.83
KRH05995 Soybean cytosol 64.3 65.3
Solyc02g032820.2.1 Tomato cytosol, plastid 53.74 65.27
Solyc03g031670.2.1 Tomato cytosol 69.1 65.1
HORVU2Hr1G096270.5 Barley plastid 63.72 64.72
TraesCS2D01G404200.1 Wheat cytosol 66.22 64.61
EES12651 Sorghum cytosol 65.64 64.17
Solyc12g005040.1.1 Tomato cytosol 12.67 64.08
TraesCS2B01G424900.1 Wheat cytosol 66.03 64.06
TraesCS2A01G407200.1 Wheat cytosol 66.03 63.82
KRH05994 Soybean cytosol 65.07 63.25
Os04t0560600-01 Rice plasma membrane 64.3 62.85
Solyc08g008170.2.1 Tomato plastid 59.5 60.08
Solyc11g064900.1.1 Tomato cytosol 58.54 57.66
Solyc12g099790.1.1 Tomato cytosol 59.12 57.57
Solyc05g056570.2.1 Tomato cytosol 55.28 57.26
Solyc01g008740.1.1 Tomato cytosol 59.31 57.12
Solyc04g049160.2.1 Tomato cytosol 55.28 56.69
Solyc06g065380.2.1 Tomato cytosol, plastid 55.09 56.61
Zm00001d026139_P001 Maize cytosol 63.15 55.48
Solyc11g018610.1.1 Tomato cytosol 53.55 55.25
Solyc10g081740.1.1 Tomato cytosol 52.4 54.71
Solyc01g112250.2.1 Tomato cytosol 54.7 53.37
Solyc10g074570.1.1 Tomato cytosol, plastid 55.09 51.53
Solyc11g006370.1.1 Tomato plastid 55.28 49.83
Solyc10g076900.1.1 Tomato cytosol 47.6 49.5
Solyc04g009800.2.1 Tomato cytosol, plastid 54.89 49.23
Solyc01g006730.2.1 Tomato cytosol 54.51 48.8
Solyc10g081640.1.1 Tomato cytosol 53.17 47.84
Solyc01g006840.2.1 Tomato cytosol 52.59 45.82
Protein Annotations
Gene3D:1.10.238.10Gene3D:1.10.510.10MapMan:18.4.5.4Gene3D:3.30.200.20InterPro:EF-hand-dom_pairInterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_domGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004683
GO:GO:0005488GO:GO:0005509GO:GO:0005515GO:GO:0005516GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006464GO:GO:0006468
GO:GO:0006950GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009605
GO:GO:0009607GO:GO:0009628GO:GO:0009719GO:GO:0009738GO:GO:0009931GO:GO:0009987
GO:GO:0016301GO:GO:0016740GO:GO:0018105GO:GO:0019538GO:GO:0035556GO:GO:0046777
GO:GO:0050832GO:GO:1901002InterPro:IPR000719InterPro:IPR002048UniProt:K4BVS0InterPro:Kinase-like_dom_sf
PFAM:PF00069PFAM:PF13499ScanProsite:PS00018ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011
PFscan:PS50222PANTHER:PTHR24349PANTHER:PTHR24349:SF89InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00054
SMART:SM00220SUPFAM:SSF47473SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASEnsemblPlantsGene:Solyc04g081910.2EnsemblPlants:Solyc04g081910.2.1
UniParc:UPI000276627CSEG:seg::::
Description
No Description!
Coordinates
chr4:+:65772076..65777008
Molecular Weight (calculated)
58926.6 Da
IEP (calculated)
5.095
GRAVY (calculated)
-0.434
Length
521 amino acids
Sequence
(BLAST)
001: MGLCFTKECC CPHYRDVPIS SSPEYNPIPV SSQKYPQNSI PEPTPAPAPA STFMPNQIGP ILGKPYVDIK TLYDLDKELG RGQFGITYLC SDKSSGLKYA
101: CKSISRRKLV TQKDIEDVRR EVTILQYLSG QPNIVEFKGA YEDKNNLHLV MELCSGGELF DRITAKGNYS EKEAARIGRQ IVNVVHVCHF MGVMHRDLKP
201: ENFLMVSKDD DSPLKATDFG LSVFIEEGKI YKDIVGSAYY VAPEVLKRKY GKEIDVWSAG VILYILLSGF PPFWAETEKG IFEEIVKGQL DFESSPWPSI
301: STSAKDLVRK MLTMDPKKRI TADEALQHPW LMKDGEASDK PIDSAVLSRL KQFRAMNKMK KLALKVIAEN LSEDEIKGLK QMFNNMDTDG SGTITYEELK
401: TGLSRLGSKL TESEIKQLMD AADVDNSGTI DYIEFITATM HRHKLEREEN LYKAFQFFDK DSSGFITRDE LRHAMEEYGM GDEATIDEIL DDVDTNKDGL
501: INYDEFVAMM RRGTVDEVKP R
Best Arabidopsis Sequence Match ( AT1G76040.2 )
(BLAST)
001: MLQNQHKTTK NQRNKNIGTK YFLRKKIMGF CFSKFGKSQT HEIPISSSSD SSPPHHYQPL PKPTVSQGQT SNPTSNPQPK PKPAPPPPPS TSSGSQIGPI
101: LNRPMIDLSA LYDLHKELGR GQFGITYKCT DKSNGREYAC KSISKRKLIR RKDIEDVRRE VMILQHLTGQ PNIVEFRGAY EDKDNLHLVM ELCSGGELFD
201: RIIKKGSYSE KEAANIFRQI VNVVHVCHFM GVVHRDLKPE NFLLVSNEED SPIKATDFGL SVFIEEGKVY RDIVGSAYYV APEVLHRNYG KEIDVWSAGV
301: MLYILLSGVP PFWGETEKTI FEAILEGKLD LETSPWPTIS ESAKDLIRKM LIRDPKKRIT AAEALEHPWM TDTKISDKPI NSAVLVRMKQ FRAMNKLKKL
401: ALKVIAENLS EEEIKGLKQT FKNMDTDESG TITFDELRNG LHRLGSKLTE SEIKQLMEAA DVDKSGTIDY IEFVTATMHR HRLEKEENLI EAFKYFDKDR
501: SGFITRDELK HSMTEYGMGD DATIDEVIND VDTDNDGRIN YEEFVAMMRK GTTDSDPKLI R
Arabidopsis Description
CPK29calcium-dependent protein kinase 29 [Source:TAIR;Acc:AT1G76040]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.