Factsheet for Solyc08g008170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23650.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT4G23650.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT4G23650.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT4G23650.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT4G23650.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT4G23650.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT4G23650.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT4G23650.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT4G23650.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT4G23650.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT4G23650.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT4G23650.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT4G23650.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT4G23650.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT4G23650.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT4G23650.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT4G23650.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014939	Potato	plastid	97.09	96.91
KRH27875	Soybean	nucleus	80.81	82.57
KRH59992	Soybean	endoplasmic reticulum	81.98	81.66
VIT_02s0025g00690.t01	Wine grape	cytosol	81.98	80.11
CDY10955	Canola	cytosol	57.95	79.52
Bra019282.1-P	Field mustard	cytosol	57.56	78.99
KRH77599	Soybean	nucleus	80.43	78.6
GSMUA_Achr6P31900_001	Banana	mitochondrion	65.89	77.98
TraesCS1B01G456700.1	Wheat	cytosol	68.41	76.74
TraesCS1A01G424200.1	Wheat	cytosol	68.22	76.52
TraesCS1D01G433400.1	Wheat	cytosol, golgi	68.22	76.52
HORVU1Hr1G092710.1	Barley	cytosol, plasma membrane	70.35	75.62
GSMUA_Achr9P05370_001	Banana	cytosol	63.76	73.77
Os01t0622600-01	Rice	plasma membrane	73.64	73.36
TraesCS3D01G228700.1	Wheat	cytosol, mitochondrion	72.67	72.39
TraesCS3B01G254500.1	Wheat	golgi, unclear	72.67	72.39
TraesCS3A01G224900.1	Wheat	cytosol, mitochondrion	72.67	72.39
EES01094	Sorghum	cytosol, mitochondrion	73.45	72.19
Zm00001d044185_P005	Maize	cytosol, mitochondrion	73.06	71.95
Zm00001d011392_P001	Maize	cytosol, plastid	73.84	71.89
GSMUA_Achr2P06360_001	Banana	plasma membrane	71.71	71.71
AT4G23650.1	Thale cress	plastid	73.06	71.27
GSMUA_Achr1P05040_001	Banana	cytosol	65.31	71.1
Bra013719.1-P	Field mustard	cytosol, plastid	72.29	71.05
Zm00001d009708_P001	Maize	mitochondrion	74.03	70.87
CDY54853	Canola	plastid	72.09	70.86
CDY44125	Canola	cytosol, plastid	72.09	70.86
EES20022	Sorghum	cytosol, mitochondrion	74.22	70.79
Bra019281.1-P	Field mustard	plastid	72.29	70.11
Bra019284.1-P	Field mustard	plastid	72.29	70.11
Os05t0585500-01	Rice	plasma membrane	73.06	69.56
KRH41261	Soybean	cytosol	57.36	67.73
Solyc11g064900.1.1	Tomato	cytosol	68.22	66.54
Solyc12g099790.1.1	Tomato	cytosol	67.64	65.23
Solyc01g008740.1.1	Tomato	cytosol	68.02	64.88
HORVU3Hr1G055730.3	Barley	plastid	72.87	63.3
Solyc07g064610.2.1	Tomato	nucleus	63.57	62.96
Solyc12g005040.1.1	Tomato	cytosol	12.4	62.14
CDY62741	Canola	endoplasmic reticulum, plasma membrane	72.67	60.98
Solyc04g081910.2.1	Tomato	cytosol, plastid	60.08	59.5
Solyc03g031670.2.1	Tomato	cytosol	63.18	58.95
Solyc02g032820.2.1	Tomato	cytosol, plastid	48.84	58.74
Solyc10g081740.1.1	Tomato	cytosol	56.2	58.12
Solyc04g049160.2.1	Tomato	cytosol	56.78	57.68
Solyc01g112250.2.1	Tomato	cytosol	59.5	57.49
Solyc06g065380.2.1	Tomato	cytosol, plastid	56.4	57.4
Solyc05g056570.2.1	Tomato	cytosol	55.62	57.06
Solyc11g018610.1.1	Tomato	cytosol	55.04	56.24
Solyc10g074570.1.1	Tomato	cytosol, plastid	59.3	54.94
Solyc11g006370.1.1	Tomato	plastid	60.08	53.63
Solyc04g009800.2.1	Tomato	cytosol, plastid	58.53	51.98
Solyc10g076900.1.1	Tomato	cytosol	50.0	51.5
Solyc01g006730.2.1	Tomato	cytosol	57.17	50.69
Solyc10g081640.1.1	Tomato	cytosol	56.2	50.09
Solyc01g006840.2.1	Tomato	cytosol	57.75	49.83

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.510.10	MapMan:18.4.5.4	Gene3D:3.30.200.20	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004683
GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0005516	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009738
GO:GO:0009931	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538
GO:GO:0035556	GO:GO:0046777	InterPro:IPR000719	InterPro:IPR002048	UniProt:K4CIV1	InterPro:Kinase-like_dom_sf
PFAM:PF00069	PFAM:PF13499	ScanProsite:PS00018	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PFscan:PS50222	PANTHER:PTHR24349	PANTHER:PTHR24349:SF182	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00054
SMART:SM00220	SUPFAM:SSF47473	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc08g008170.2	EnsemblPlants:Solyc08g008170.2.1
UniParc:UPI000276CA69	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:2637882..2642478

Molecular Weight (calculated)

57706.8 Da

IEP (calculated)

6.021

GRAVY (calculated)

-0.429

Length

516 amino acids

Sequence
(BLAST)

001: MGNCNSLSSD QATTTSGGGG GGGAPSTPST TGIRIIPSSQ PPPPRPLSGI GRVLGRPMED VRSIYIFGGE LGRGQFGVTY LVTNKKTRQQ FACKSIATRK
101: LINKDDVDDV RREVQIMHHL TGHRNIVELK GTFEDKHHVH LVMELCAGGE LFDRIIAKGH YSERAAAGVC RQMVTVVHNC HSMGVMHRDL KPENFLFLSS
201: DETSPLKATD FGLSVFFKPG DVFKDLVGSA YYVAPEVLRR EYGPEADIWS AGVILYILLS GVPPFYGEND QSIFDAVLRG HLDFSSDPWP SVSSSAKDLV
301: KKMLRSDPRE RISAAEVLNH PWMREDGDAS DKPLDIAVLS RMKQFRAMNK LKKVALKVIA ENLSEEEIIG LKEMFKSIDT DDSGTITFEE LKAGLTKMGT
401: KLSESEVRQL MEAADVDGNG TIDYLEFITA TMHMNRMERE DHLYKAFEYF DKDKSGYITM EELEHALKEY NITDDKTIKE IIAEVDTDND GRINYDEFAA
501: MMRKGNPDFV NNRRRR

Best Arabidopsis Sequence Match ( AT4G23650.1 )
(BLAST)

001: MGHRHSKSKS SDPPPSSSSS SSGNVVHHVK PAGERRGSSG SGTVGSSGSG TGGSRSTTST QQNGRILGRP MEEVRRTYEF GRELGRGQFG VTYLVTHKET
101: KQQVACKSIP TRRLVHKDDI EDVRREVQIM HHLSGHRNIV DLKGAYEDRH SVNLIMELCE GGELFDRIIS KGLYSERAAA DLCRQMVMVV HSCHSMGVMH
201: RDLKPENFLF LSKDENSPLK ATDFGLSVFF KPGDKFKDLV GSAYYVAPEV LKRNYGPEAD IWSAGVILYI LLSGVPPFWG ENETGIFDAI LQGQLDFSAD
301: PWPALSDGAK DLVRKMLKYD PKDRLTAAEV LNHPWIREDG EASDKPLDNA VLSRMKQFRA MNKLKKMALK VIAENLSEEE IIGLKEMFKS LDTDNNGIVT
401: LEELRTGLPK LGSKISEAEI RQLMEAADMD GDGSIDYLEF ISATMHMNRI EREDHLYTAF QFFDNDNSGY ITMEELELAM KKYNMGDDKS IKEIIAEVDT
501: DRDGKINYEE FVAMMKKGNP ELVPNRRRM

Arabidopsis Description

CPK3CPK3 [Source:UniProtKB/TrEMBL;Acc:A0A178V4I3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.