Factsheet for Solyc03g005240.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g098160.2.1
Solyc01g102260.2.1
Solyc01g102680.2.1
Solyc01g109120.2.1
Solyc02g064980.1.1
Solyc02g065430.1.1
Solyc02g067220.2.1
Solyc02g067560.1.1
Solyc02g071740.2.1
Solyc02g079100.2.1
Solyc02g084640.2.1
Solyc02g087460.1.1
Solyc02g088090.1.1
Solyc02g089420.1.1
Solyc02g089990.1.1
Solyc02g090970.1.1
Solyc02g090980.1.1
Solyc02g090990.1.1
Solyc02g092640.2.1
Solyc02g092930.1.1
Solyc02g093410.2.1
Solyc03g005920.2.1
Solyc03g044140.2.1
Solyc03g044860.1.1
Solyc03g046440.1.1
Solyc03g083420.2.1
Solyc03g113390.2.1
Solyc03g114680.2.1
Solyc03g114830.2.1
Solyc04g005320.2.1
Solyc04g014410.2.1
Solyc04g025600.1.1
Solyc04g025970.1.1
Solyc04g074980.2.1
Solyc04g079710.2.1
Solyc04g082840.2.1
Solyc04g082880.2.1
Solyc05g012020.2.1
Solyc05g053300.2.1
Solyc06g050350.2.1
Solyc06g053560.2.1
Solyc06g054640.1.1
Solyc06g069430.2.1
Solyc06g083900.2.1
Solyc07g039340.2.1
Solyc07g053450.2.1
Solyc07g055200.2.1
Solyc08g008170.2.1
Solyc08g008280.2.1
Solyc08g077730.2.1
Solyc08g082110.2.1
Solyc09g011060.2.1
Solyc09g011990.1.1
Solyc09g012000.1.1
Solyc09g015520.2.1
Solyc09g074240.1.1
Solyc09g090200.2.1
Solyc09g090250.2.1
Solyc11g010730.1.1
Solyc11g061720.1.1
Solyc11g069460.1.1
Solyc12g009570.1.1
Solyc12g010800.1.1
Solyc12g095760.1.1
Solyc12g099100.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14640.1	Solyc04g082840.2.1	AT1G20930.1	17360592
AT4G14640.1	Solyc04g082880.2.1	AT1G20950.1	17360592
AT4G14640.1	Solyc12g095760.1.1	AT1G20950.1	17360592
AT4G14640.1	Solyc11g061720.1.1	AT1G51170.1	17360592
AT4G14640.1	Solyc01g098160.2.1	AT1G54610.1	17360592
AT4G14640.1	Solyc03g113390.2.1	AT1G74740.1	17360592
AT4G14640.1	Solyc06g054640.1.1	AT1G77145.1	17360592
AT4G14640.1	Solyc04g005320.2.1	AT2G03710.1	17360592
AT4G14640.1	Solyc05g012020.2.1	AT2G03710.1	17360592
AT4G14640.1	Solyc02g092640.2.1	AT2G23080.1	17360592
AT4G14640.1	Solyc03g044140.2.1	AT2G23080.1	17360592
AT4G14640.1	Solyc02g092930.1.1	AT2G23290.1	17360592
AT4G14640.1	Solyc04g025970.1.1	AT2G24840.1	17360592
AT4G14640.1	Solyc11g069460.1.1	AT2G28380.1	17360592
AT4G14640.1	Solyc04g025600.1.1	AT2G30980.1	17360592
AT4G14640.1	Solyc07g055200.2.1	AT2G30980.1	17360592
AT4G14640.1	Solyc06g083900.2.1	AT2G31180.1	17360592
AT4G14640.1	Solyc09g074240.1.1	AT2G48010.1	17360592
AT4G14640.1	Solyc01g098160.2.1	AT3G05050.1	17360592
AT4G14640.1	Solyc05g053300.2.1	AT3G17240.1	17360592
AT4G14640.1	Solyc12g099100.1.1	AT3G17240.1	17360592
AT4G14640.1	Solyc09g090200.2.1	AT3G23310.1	17360592
AT4G14640.1	Solyc02g067560.1.1	AT3G28450.1	17360592
AT4G14640.1	Solyc02g087460.1.1	AT3G28450.1	17360592
AT4G14640.1	Solyc02g064980.1.1	AT3G50310.1	17360592
AT4G14640.1	Solyc02g090970.1.1	AT3G50310.1	17360592
AT4G14640.1	Solyc02g090980.1.1	AT3G50310.1	17360592
AT4G14640.1	Solyc02g090990.1.1	AT3G50310.1	17360592
AT4G14640.1	Solyc06g050350.2.1	AT3G56270.1	17360592
AT4G14640.1	Solyc07g053450.2.1	AT3G58120.1	17360592
AT4G14640.1	Solyc12g010800.1.1	AT3G58120.1	17360592
AT4G14640.1	Solyc09g011060.2.1	AT4G02410.1	17360592
AT4G14640.1	Solyc09g011990.1.1	AT4G02410.1	17360592
AT4G14640.1	Solyc09g012000.1.1	AT4G02410.1	17360592
AT4G14640.1	Solyc06g053560.2.1	AT4G14340.1	17360592
AT4G14640.1	Solyc09g090250.2.1	AT4G14340.1	17360592
AT4G14640.1	Solyc08g077730.2.1	AT4G17080.1	17360592
AT4G14640.1	Solyc02g071740.2.1	AT4G18950.1	17360592
AT4G14640.1	Solyc03g005920.2.1	AT4G18950.1	17360592
AT4G14640.1	Solyc02g079100.2.1	AT4G21470.1	17360592
AT4G14640.1	Solyc08g008170.2.1	AT4G23650.1	17360592
AT4G14640.1	Solyc08g008280.2.1	AT4G23810.1	17360592
AT4G14640.1	Solyc08g082110.2.1	AT4G23810.1	17360592
AT4G14640.1	Solyc04g074980.2.1	AT4G24390.1	17360592
AT4G14640.1	Solyc01g109120.2.1	AT4G34380.1	17360592
AT4G14640.1	Solyc02g084640.2.1	AT4G36250.1	17360592
AT4G14640.1	Solyc02g065430.1.1	AT4G37240.1	17360592
AT4G14640.1	Solyc02g089990.1.1	AT4G37240.1	17360592
AT4G14640.1	Solyc03g044860.1.1	AT4G37240.1	17360592
AT4G14640.1	Solyc09g015520.2.1	AT5G01890.1	17360592
AT4G14640.1	Solyc03g114680.2.1	AT5G08139.1	17360592
AT4G14640.1	Solyc04g014410.2.1	AT5G10520.1	17360592
AT4G14640.1	Solyc11g010730.1.1	AT5G10520.1	17360592
AT4G14640.1	Solyc02g089420.1.1	AT5G15830.1	17360592
AT4G14640.1	Solyc03g046440.1.1	AT5G15830.1	17360592
AT4G14640.1	Solyc12g009570.1.1	AT5G35410.1	17360592
AT4G14640.1	Solyc02g089420.1.1	AT5G38800.1	17360592
AT4G14640.1	Solyc03g046440.1.1	AT5G38800.1	17360592
AT4G14640.1	Solyc02g067220.2.1	AT5G39670.1	17360592
AT4G14640.1	Solyc02g088090.1.1	AT5G39670.1	17360592
AT4G14640.1	Solyc02g093410.2.1	AT5G40540.1	17360592
AT4G14640.1	Solyc01g102260.2.1	AT5G48670.1	17360592
AT4G14640.1	Solyc01g102680.2.1	AT5G49760.1	17360592
AT4G14640.1	Solyc03g083420.2.1	AT5G53450.1	17360592
AT4G14640.1	Solyc07g039340.2.1	AT5G56890.1	17360592
AT4G14640.1	Solyc03g114830.2.1	AT5G60910.1	17360592
AT4G14640.1	Solyc06g069430.2.1	AT5G60910.1	17360592
AT4G14640.1	Solyc04g079710.2.1	AT5G66790.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034833	Potato	cytosol	96.08	96.08
VIT_05s0020g04420.t01	Wine grape	cytosol	73.86	75.84
KRH69070	Soybean	cytosol	72.55	74.0
KRG92449	Soybean	cytosol	72.55	74.0
KRH34350	Soybean	cytosol	71.9	73.33
KRH31638	Soybean	cytosol	71.24	72.67
Solyc06g053930.2.1	Tomato	cytosol	69.93	71.81
Solyc03g098050.2.1	Tomato	nucleus	67.32	69.13
Solyc01g008950.2.1	Tomato	nucleus	66.67	68.46
GSMUA_Achr2P12680_001	Banana	cytosol	66.01	68.24
AT4G14640.1	Thale cress	cytosol	67.32	68.21
Solyc10g077010.1.1	Tomato	cytosol	66.01	67.79
Solyc11g072240.1.1	Tomato	cytosol	66.01	67.79
Solyc12g099990.1.1	Tomato	nucleus	66.01	67.79
GSMUA_Achr4P22570_001	Banana	cytosol	65.36	67.57
Solyc10g081170.1.1	Tomato	extracellular	65.36	67.11
GSMUA_Achr1P04700_001	Banana	cytosol	64.71	66.89
GSMUA_Achr7P01390_001	Banana	cytosol	64.71	66.89
GSMUA_Achr1P27230_001	Banana	cytosol	64.05	66.22
CDY06478	Canola	cytosol	64.71	65.56
Bra023786.1-P	Field mustard	cytosol	66.01	64.74
CDY34215	Canola	cytosol	66.01	64.74
Bra039723.1-P	Field mustard	cytosol	64.71	64.71
Bra033898.1-P	Field mustard	cytosol	65.36	64.52
GSMUA_Achr5P09010_001	Banana	cytosol	62.09	64.19
CDY10686	Canola	cytosol	64.71	63.87
GSMUA_Achr6P24410_001	Banana	cytosol	62.09	63.76
CDX92965	Canola	cytosol	64.05	63.64
Bra001892.1-P	Field mustard	cytosol	64.05	63.64
CDX94883	Canola	cytosol	44.44	61.26
Solyc01g105630.2.1	Tomato	cytosol	58.82	61.22
CDY10325	Canola	cytosol	44.44	60.18
AT3G22930.1	Thale cress	cytosol	65.36	57.8
KXG37587	Sorghum	cytosol	57.52	57.14
Os03t0743500-02	Rice	nucleus	57.52	57.14
CDY40824	Canola	cytosol	66.01	56.11
Zm00001d033980_P001	Maize	cytosol	47.71	46.5
TraesCS5A01G382800.2	Wheat	plastid	53.59	43.85
GSMUA_Achr3P25390_001	Banana	cytosol	50.33	42.08
GSMUA_Achr1P14070_001	Banana	cytosol	57.52	38.94
Solyc03g097100.1.1	Tomato	cytosol	38.56	36.2
Solyc03g083520.2.1	Tomato	cytosol, nucleus	35.29	36.0
Solyc02g090810.2.1	Tomato	cytosol, mitochondrion	39.22	35.71
Solyc01g010020.2.1	Tomato	cytosol	36.6	34.78
Solyc04g026350.2.1	Tomato	cytosol	39.22	34.68
Solyc11g072270.1.1	Tomato	cytosol	34.64	33.97
Solyc03g114420.1.1	Tomato	cytosol	33.99	30.41
KXG37588	Sorghum	mitochondrion, nucleus	1.31	1.46

Protein Annotations

EnsemblPlants:Solyc03g005240.1.1	EnsemblPlantsGene:Solyc03g005240.1	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	ncoils:Coil	PANTHER:PTHR23050
PANTHER:PTHR23050:SF336	PFAM:PF13499	PFAM:PF13833	PFscan:PS50222	ScanProsite:PS00018	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI000276906F	UniProt:K4BDU8	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3:+:139692..142348

Molecular Weight (calculated)

17839.2 Da

IEP (calculated)

4.146

GRAVY (calculated)

-0.498

Length

153 amino acids

Sequence
(BLAST)

001: MADKIEKEEN QLLQFKEAIN LFDKDVHGCI TIEELATVIR SLDENPTEEE LCHMISEVDA DHHDNGTMEF IEFLNLITKK MKETDLEEEL KEVFKVFDKD
101: QNGFISATDL RHVMINLGEK LTEEEAQHMI READLDGDGQ VNFDEFFKMM IKL

Best Arabidopsis Sequence Match ( AT1G66410.1 )
(BLAST)

001: MADQLTDEQI SEFKEAFSLF DKDGDGCITT KELGTVMRSL GQNPTEAELQ DMINEVDADG NGTIDFPEFL NLMAKKMKDT DSEEELKEAF RVFDKDQNGF
101: ISAAELRHVM TNLGEKLTDE EVEEMIREAD VDGDGQINYE EFVKIMMAK

Arabidopsis Description

CAM4Calmodulin 4 [Source:UniProtKB/TrEMBL;Acc:F4IEU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.