Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- extracellular 3
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400064699 | Potato | golgi | 75.0 | 54.4 |
Solyc02g088090.1.1 | Tomato | extracellular, golgi | 55.71 | 43.09 |
Bra039037.1-P | Field mustard | cytosol | 27.86 | 37.14 |
CDY20005 | Canola | cytosol | 27.86 | 37.14 |
CDX74438 | Canola | cytosol | 26.43 | 34.58 |
CDY30262 | Canola | cytosol | 26.43 | 34.58 |
KRH16684 | Soybean | cytosol | 37.86 | 27.46 |
CDY66024 | Canola | endoplasmic reticulum, extracellular | 35.0 | 26.63 |
CDX85236 | Canola | endoplasmic reticulum, extracellular | 35.71 | 26.6 |
KRH40081 | Soybean | cytosol | 39.29 | 26.57 |
Bra030349.1-P | Field mustard | endoplasmic reticulum, plastid | 35.0 | 26.49 |
CDY37011 | Canola | plastid | 36.43 | 26.42 |
Bra025654.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 35.0 | 26.06 |
Bra028438.1-P | Field mustard | plastid | 36.43 | 26.02 |
CDX67435 | Canola | plastid | 36.43 | 26.02 |
Bra033077.1-P | Field mustard | cytosol, endoplasmic reticulum, mitochondrion, plastid | 34.29 | 25.81 |
KRH01190 | Soybean | cytosol, nucleus, vacuole | 37.86 | 25.6 |
CDY15945 | Canola | plastid | 35.71 | 25.51 |
AT3G29000.1 | Thale cress | endoplasmic reticulum | 35.0 | 25.26 |
CDY44416 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plastid | 33.57 | 25.13 |
Solyc12g009630.1.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 27.86 | 25.0 |
CDX99659 | Canola | extracellular | 31.43 | 24.86 |
AT5G39670.1 | Thale cress | plastid | 35.71 | 24.51 |
VIT_14s0108g01000.t01 | Wine grape | cytosol | 27.14 | 24.36 |
CDX74439 | Canola | endoplasmic reticulum, extracellular, plastid, vacuole | 34.29 | 24.12 |
Solyc06g069740.1.1 | Tomato | endoplasmic reticulum | 27.14 | 20.54 |
Solyc03g115930.1.1 | Tomato | cytosol | 27.14 | 18.81 |
Protein Annotations
Gene3D:1.10.238.10 | MapMan:35.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR002048 |
UniProt:K4B754 | PFAM:PF13499 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR45512 | PANTHER:PTHR45512:SF1 |
SMART:SM00054 | SUPFAM:SSF47473 | EnsemblPlantsGene:Solyc02g067220.2 | EnsemblPlants:Solyc02g067220.2.1 | TMHMM:TMhelix | UniParc:UPI00027691C0 |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:37407185..37408226
Molecular Weight (calculated)
16055.3 Da
IEP (calculated)
5.626
GRAVY (calculated)
-0.104
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MSASNYLNRF SIKKLPVSTV PVPLVIHGLV GFFLLYIIFD WGRKFLNFLS QSQKSKSEKG NHNATTTSHH NNVPYLLVDE VFDVFDENRD GFIDEMELQK
101: VLCALGFKEA AELENCRKMI LAFDGNKDGK INFEEFVEMI
101: VLCALGFKEA AELENCRKMI LAFDGNKDGK INFEEFVEMI
001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC
Arabidopsis Description
CML46Probable calcium-binding protein CML45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z27]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.