CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39670.1	CDX73678	AT3G51920.1	17360592
AT5G39670.1	CDX95314	AT3G51920.1	17360592
AT5G39670.1	CDY23174	AT3G51920.1	17360592
AT5G39670.1	CDY06478	AT4G14640.1	17360592
AT5G39670.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74438	Canola	cytosol	100.0	100.0
CDY20005	Canola	cytosol	71.96	73.33
Bra025654.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	97.2	55.32
CDX74439	Canola	endoplasmic reticulum, extracellular, plastid, vacuole	100.0	53.77
CDX99659	Canola	extracellular	83.18	50.28
CDY37011	Canola	plastid	90.65	50.26
CDX67435	Canola	plastid	87.85	47.96
CDY15945	Canola	plastid	85.05	46.43
AT5G39670.1	Thale cress	plastid	86.92	45.59
CDX85236	Canola	endoplasmic reticulum, extracellular	75.7	43.09
CDY66024	Canola	endoplasmic reticulum, extracellular	73.83	42.93
CDY06192	Canola	cytosol	28.04	41.67
CDY09997	Canola	cytosol	28.04	41.67
VIT_14s0108g01000.t01	Wine grape	cytosol	57.01	39.1
CDY35936	Canola	cytosol	29.91	38.1
CDY28045	Canola	cytosol	29.91	38.1
CDY44416	Canola	cytosol, endoplasmic reticulum, mitochondrion, plastid	66.36	37.97
KRH40081	Soybean	cytosol	67.29	34.78
KRH01190	Soybean	cytosol, nucleus, vacuole	66.36	34.3
CDY09996	Canola	cytosol	27.1	31.87
KRH16684	Soybean	cytosol	50.47	27.98
PGSC0003DMT400003364	Potato	endoplasmic reticulum, golgi	47.66	27.27
Solyc02g088090.1.1	Tomato	extracellular, golgi	44.86	26.52
Solyc02g067220.2.1	Tomato	extracellular	34.58	26.43
PGSC0003DMT400064699	Potato	golgi	41.12	22.8

Protein Annotations

EnsemblPlants:CDY30262	EnsemblPlantsGene:GSBRNA2T00044903001	Gene3D:1.10.238.10	GO:A0A078GYD6	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR45512
PANTHER:PTHR45512:SF1	PFAM:PF13499	PFscan:PS50222	ProteinID:CDY30262	ProteinID:CDY30262.1	ScanProsite:PS00018
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0004EE855D	UniProt:A0A078GYD6	MapMan:35.1	:

Description

BnaC04g31730DBnaA04g09510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYD6]

Coordinates

chrLK032251:+:150602..150925

Molecular Weight (calculated)

12372.6 Da

IEP (calculated)

4.197

GRAVY (calculated)

-0.520

Length

107 amino acids

Sequence
(BLAST)

001: MVMRSLGLLA DSESEGLQKR YSSEELSNLF EETEPSLEEV KQAFDVFDEN RDGFLDPIDL KRVLTVLGLE QGSNLENCRR MIRSFDGNKD GRIDFYGFVK
101: FMENNFC

Best Arabidopsis Sequence Match ( AT5G39670.1 )
(BLAST)

001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC

Arabidopsis Description

CML46Probable calcium-binding protein CML45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.