Factsheet for Solyc02g088090.1.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 3
plasma membrane 3
endoplasmic reticulum 2
vacuole 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39670.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT5G39670.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT5G39670.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT5G39670.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT5G39670.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT5G39670.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT5G39670.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT5G39670.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT5G39670.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT5G39670.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT5G39670.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT5G39670.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT5G39670.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT5G39670.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT5G39670.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT5G39670.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT5G39670.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003364	Potato	endoplasmic reticulum, golgi	78.45	75.94
Solyc02g067220.2.1	Tomato	extracellular	43.09	55.71
CDY30262	Canola	cytosol	26.52	44.86
CDX74438	Canola	cytosol	26.52	44.86
CDY20005	Canola	cytosol	24.86	42.86
Bra039037.1-P	Field mustard	cytosol	24.86	42.86
VIT_14s0108g01000.t01	Wine grape	cytosol	30.94	35.9
CDY37011	Canola	plastid	35.36	33.16
AT3G29000.1	Thale cress	endoplasmic reticulum	35.36	32.99
Bra030349.1-P	Field mustard	endoplasmic reticulum, plastid	33.7	32.97
KRH01190	Soybean	cytosol, nucleus, vacuole	37.57	32.85
Bra028438.1-P	Field mustard	plastid	35.36	32.65
CDX67435	Canola	plastid	35.36	32.65
Bra025654.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	33.7	32.45
KRH40081	Soybean	cytosol	37.02	32.37
CDX99659	Canola	extracellular	31.49	32.2
CDY15945	Canola	plastid	34.81	32.14
CDY66024	Canola	endoplasmic reticulum, extracellular	32.04	31.52
CDX85236	Canola	endoplasmic reticulum, extracellular	32.04	30.85
AT5G39670.1	Thale cress	plastid	34.25	30.39
CDX74439	Canola	endoplasmic reticulum, extracellular, plastid, vacuole	33.15	30.15
Bra033077.1-P	Field mustard	cytosol, endoplasmic reticulum, mitochondrion, plastid	30.94	30.11
Solyc12g009630.1.1	Tomato	endoplasmic reticulum, extracellular, golgi	25.41	29.49
CDY44416	Canola	cytosol, endoplasmic reticulum, mitochondrion, plastid	30.39	29.41
KRH16684	Soybean	cytosol	30.94	29.02
Solyc06g069740.1.1	Tomato	endoplasmic reticulum	25.41	24.86
Solyc03g115930.1.1	Tomato	cytosol	24.86	22.28

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR002048
UniProt:K4BBW5	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR45512	PANTHER:PTHR45512:SF1
SMART:SM00054	SUPFAM:SSF47473	EnsemblPlantsGene:Solyc02g088090.1	EnsemblPlants:Solyc02g088090.1.1	TMHMM:TMhelix	UniParc:UPI00027684D0

Description

No Description!

Coordinates

chr2:+:50279343..50279888

Molecular Weight (calculated)

20807.2 Da

IEP (calculated)

4.459

GRAVY (calculated)

-0.077

Length

181 amino acids

Sequence
(BLAST)

001: MAASNYLNRF PFKKFPVTTI PVPLLIHGAV GFFFLYIIFD CARRLFTFLS FAETQVCEKH DTPKKLSEKL VDGSLNREEV EMVMANLGIF ANPEGVKIQE
101: RLDIFELFGE ELEAKEQEVR EAFDVFDENK DGFIDERDLQ RVLCALGLKG VAELDNCKKM IMAFDENGDG RIDFQEFVKM L

Best Arabidopsis Sequence Match ( AT3G29000.1 )
(BLAST)

001: MESKSSSSSL PLFALFNFFL ISFCRWVSST RIFLSRFVPL LQHHQRVFDK KNNKDQQETL TKQEDDDDDD DDDDDDDDDD IDISREEAEM VMRSLGLFYN
101: DDQLQEQYSA KEVSSLFEEK EASLEEVKQA FDVFDENKDG FIDAIELQRV LTILGFKQGS YLDNCLVMIR SLDGNKDGKI DFNEFVKFME TSFY

Arabidopsis Description

CML45Probable calcium-binding protein CML30 [Source:UniProtKB/Swiss-Prot;Acc:Q9MBG5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.