Factsheet for VIT_14s0108g01000.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 2
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39670.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT5G39670.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT5G39670.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT5G39670.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT5G39670.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT5G39670.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT5G39670.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039037.1-P	Field mustard	cytosol	39.1	58.1
CDY20005	Canola	cytosol	39.1	58.1
CDX74438	Canola	cytosol	39.1	57.01
CDY30262	Canola	cytosol	39.1	57.01
CDY66024	Canola	endoplasmic reticulum, extracellular	46.15	39.13
CDX99659	Canola	extracellular	44.23	38.98
CDY37011	Canola	plastid	47.44	38.34
Bra025654.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	45.51	37.77
CDX85236	Canola	endoplasmic reticulum, extracellular	45.51	37.77
Bra033077.1-P	Field mustard	cytosol, endoplasmic reticulum, mitochondrion, plastid	44.87	37.63
CDY44416	Canola	cytosol, endoplasmic reticulum, mitochondrion, plastid	44.23	36.9
Bra030349.1-P	Field mustard	endoplasmic reticulum, plastid	43.59	36.76
CDY15945	Canola	plastid	46.15	36.73
VIT_01s0026g02590.t01	Wine grape	endoplasmic reticulum	42.31	36.67
AT3G29000.1	Thale cress	endoplasmic reticulum	44.23	35.57
CDX67435	Canola	plastid	44.23	35.2
Bra028438.1-P	Field mustard	plastid	44.23	35.2
CDX74439	Canola	endoplasmic reticulum, extracellular, plastid, vacuole	44.87	35.18
PGSC0003DMT400003364	Potato	endoplasmic reticulum, golgi	41.03	34.22
AT5G39670.1	Thale cress	plastid	44.23	33.82
KRH40081	Soybean	cytosol	44.87	33.82
KRH01190	Soybean	cytosol, nucleus, vacuole	44.87	33.82
GSMUA_Achr7P21710_001	Banana	cytosol	26.92	31.34
Solyc02g088090.1.1	Tomato	extracellular, golgi	35.9	30.94
PGSC0003DMT400064699	Potato	golgi	37.82	30.57
KRH16684	Soybean	cytosol	35.26	28.5
TraesCS5D01G238700.1	Wheat	plastid	31.41	28.16
HORVU5Hr1G066260.1	Barley	plastid	32.05	27.47
Zm00001d005766_P001	Maize	plastid	31.41	27.22
Solyc02g067220.2.1	Tomato	extracellular	24.36	27.14
EER98893	Sorghum	plastid	32.69	26.98
GSMUA_Achr9P17010_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	26.92	26.92
GSMUA_AchrUn_...	Banana	cytosol	28.21	26.67
TraesCS5A01G229000.1	Wheat	plastid	30.13	26.4
TraesCS1A01G435100.1	Wheat	extracellular	28.85	25.71
TraesCS1B01G471000.1	Wheat	endoplasmic reticulum, golgi	30.13	25.27
TraesCS1A01G435200.1	Wheat	endoplasmic reticulum, extracellular	30.13	25.27
TraesCS1B01G470900.1	Wheat	endoplasmic reticulum, golgi	29.49	24.73
OQU88717	Sorghum	cytosol	28.85	24.46
TraesCS1D01G444200.1	Wheat	endoplasmic reticulum, golgi	30.13	24.35
HORVU1Hr1G094230.1	Barley	extracellular, golgi	28.85	24.19
HORVU1Hr1G094160.1	Barley	extracellular	28.85	24.19
Os12t0140050-00	Rice	cytosol	22.44	23.18
Zm00001d013004_P001	Maize	vacuole	28.21	20.09
TraesCS5B01G227700.1	Wheat	plastid	28.85	19.74
TraesCS5A01G467800.1	Wheat	endoplasmic reticulum, plastid	25.0	19.6
TraesCS5D01G481000.1	Wheat	extracellular, plastid	24.36	19.1
Os03t0812800-00	Rice	extracellular	26.28	19.07
TraesCS5B01G480300.1	Wheat	endoplasmic reticulum, plastid	23.72	18.23
HORVU5Hr1G111520.1	Barley	plastid	23.72	17.96
Os03t0812400-01	Rice	endoplasmic reticulum, plastid	24.36	17.84
OQU90756	Sorghum	endoplasmic reticulum, vacuole	24.36	16.74

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100249271	wikigene:100249271	MapMan:35.1	ProteinID:CCB47567	ProteinID:CCB47567.1
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	UniProt:F6H5U6	EMBL:FN595239	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	EntrezGene:LOC100249271	wikigene:LOC100249271	PFAM:PF13499
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR45512	PANTHER:PTHR45512:SF1	SMART:SM00054	SUPFAM:SSF47473
TIGR:TC66010	UniParc:UPI000210814A	ArrayExpress:VIT_14s0108g01000	EnsemblPlantsGene:VIT_14s0108g01000	EnsemblPlants:VIT_14s0108g01000.t01	unigene:Vvi.1397
RefSeq:XP_002283723	RefSeq:XP_002283723.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:+:29638769..29639506

Molecular Weight (calculated)

18246.5 Da

IEP (calculated)

4.347

GRAVY (calculated)

-0.610

Length

156 amino acids

Sequence
(BLAST)

001: MSFFQSQFSF FCNTELWAER KSQDFEVPSR PLSQNVKVDD RSLCREDMET VMERLGICCN PEGEKLQERL RPEELAGLFE EKEPSLEELK EAFLVFDANR
101: DGFIDAKELQ RVLLNLGFRQ GTGIEDCKKM ISSHDENRDG RIDFNEFVKF TENCLI

Best Arabidopsis Sequence Match ( AT5G39670.1 )
(BLAST)

001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC

Arabidopsis Description

CML46Probable calcium-binding protein CML45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.