CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39670.1	CDX73678	AT3G51920.1	17360592
AT5G39670.1	CDX95314	AT3G51920.1	17360592
AT5G39670.1	CDY23174	AT3G51920.1	17360592
AT5G39670.1	CDY06478	AT4G14640.1	17360592
AT5G39670.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67435	Canola	plastid	93.26	91.84
CDY30262	Canola	cytosol	50.26	90.65
CDX74438	Canola	cytosol	50.26	90.65
CDY15945	Canola	plastid	80.83	79.59
CDY20005	Canola	cytosol	39.9	73.33
CDX99659	Canola	extracellular	64.25	70.06
CDX74439	Canola	endoplasmic reticulum, extracellular, plastid, vacuole	70.47	68.34
AT5G39670.1	Thale cress	plastid	69.43	65.69
CDX85236	Canola	endoplasmic reticulum, extracellular	58.03	59.57
CDY66024	Canola	endoplasmic reticulum, extracellular	55.96	58.7
CDY44416	Canola	cytosol, endoplasmic reticulum, mitochondrion, plastid	51.3	52.94
VIT_14s0108g01000.t01	Wine grape	cytosol	38.34	47.44
CDY09997	Canola	cytosol	16.06	43.06
CDY06192	Canola	cytosol	16.06	43.06
KRH01190	Soybean	cytosol, nucleus, vacuole	46.11	43.0
KRH40081	Soybean	cytosol	46.11	43.0
CDY28045	Canola	cytosol	17.62	40.48
CDY35936	Canola	cytosol	17.62	40.48
KRH16684	Soybean	cytosol	36.79	36.79
Solyc02g067220.2.1	Tomato	extracellular	26.42	36.43
Solyc02g088090.1.1	Tomato	extracellular, golgi	33.16	35.36
PGSC0003DMT400003364	Potato	endoplasmic reticulum, golgi	34.2	35.29
CDY09996	Canola	cytosol	15.54	32.97
PGSC0003DMT400064699	Potato	golgi	32.12	32.12

Protein Annotations

EnsemblPlants:CDY37011	EnsemblPlantsGene:GSBRNA2T00063213001	Gene3D:1.10.238.10	GO:A0A078HH37	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR45512
PANTHER:PTHR45512:SF1	PFAM:PF13499	PFscan:PS50222	ProteinID:CDY37011	ProteinID:CDY37011.1	ScanProsite:PS00018
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0004EC63C7	UniProt:A0A078HH37	MapMan:35.1	:

Description

BnaC06g12520DBnaC06g12520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HH37]

Coordinates

chrLK032389:+:343230..343909

Molecular Weight (calculated)

22498.7 Da

IEP (calculated)

4.958

GRAVY (calculated)

-0.346

Length

193 amino acids

Sequence
(BLAST)

001: MTANHLYCLI TMEKSSLFQC KHSSSSFLVD FFLTVFFRWV SFAQSFFSRF CHLPQHQHFV SEKKSKDLEI QSLIEHGNGL CIEDAEMVMQ SLGLFTDQES
101: EGLQKRYSSE ELSNLFEEKE PSLEEVKQAF DVFDENRDGF LDPIDLQRVL SILGLKQGSN LENCRRMIRS FDGNKDGRID FHGFVKFMEN NFC

Best Arabidopsis Sequence Match ( AT5G39670.1 )
(BLAST)

001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC

Arabidopsis Description

CML46Probable calcium-binding protein CML45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.