CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, extracellular, vacuole

Predictor Summary:

plastid 3
endoplasmic reticulum 2
extracellular 2
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39670.1	CDX73678	AT3G51920.1	17360592
AT5G39670.1	CDX95314	AT3G51920.1	17360592
AT5G39670.1	CDY23174	AT3G51920.1	17360592
AT5G39670.1	CDY06478	AT4G14640.1	17360592
AT5G39670.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30262	Canola	cytosol	53.77	100.0
CDX74438	Canola	cytosol	53.77	100.0
Bra025654.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	86.93	92.02
CDY20005	Canola	cytosol	38.69	73.33
CDX67435	Canola	plastid	70.85	71.94
CDY37011	Canola	plastid	68.34	70.47
CDY15945	Canola	plastid	67.34	68.37
CDX99659	Canola	extracellular	59.8	67.23
AT5G39670.1	Thale cress	plastid	68.34	66.67
CDX85236	Canola	endoplasmic reticulum, extracellular	54.27	57.45
CDY66024	Canola	endoplasmic reticulum, extracellular	52.26	56.52
CDY44416	Canola	cytosol, endoplasmic reticulum, mitochondrion, plastid	46.73	49.73
VIT_14s0108g01000.t01	Wine grape	cytosol	35.18	44.87
KRH01190	Soybean	cytosol, nucleus, vacuole	44.22	42.51
KRH40081	Soybean	cytosol	43.72	42.03
CDY09997	Canola	cytosol	15.08	41.67
CDY06192	Canola	cytosol	15.08	41.67
CDY28045	Canola	cytosol	16.08	38.1
CDY35936	Canola	cytosol	16.08	38.1
KRH16684	Soybean	cytosol	35.18	36.27
Solyc02g067220.2.1	Tomato	extracellular	24.12	34.29
PGSC0003DMT400003364	Potato	endoplasmic reticulum, golgi	32.16	34.22
Solyc02g088090.1.1	Tomato	extracellular, golgi	30.15	33.15
CDY09996	Canola	cytosol	14.57	31.87
PGSC0003DMT400064699	Potato	golgi	28.14	29.02

Protein Annotations

EnsemblPlants:CDX74439	EnsemblPlantsGene:GSBRNA2T00114305001	Gene3D:1.10.238.10	GO:A0A078CE46	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR45512
PANTHER:PTHR45512:SF1	PFAM:PF13499	PFscan:PS50222	ProteinID:CDX74439	ProteinID:CDX74439.1	ScanProsite:PS00018
SEG:seg	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0004EE6A32	MapMan:35.1	:

Description

BnaA04g09500D

Coordinates

chrLK031801:-:303844..304443

Molecular Weight (calculated)

22751.0 Da

IEP (calculated)

4.521

GRAVY (calculated)

-0.283

Length

199 amino acids

Sequence
(BLAST)

001: MTGSHLYCLI TMEKSSLSEC KHSSSSSCFP LFGLIDLFLI SFLKWVSLAQ IFFSRSCPLL AHQQCVSEKK NKDLEVQSSV KQDDGLFRED AEMVMRSLGL
101: LADSESEGLQ KRYSSEELSN LFEETEPSLE EVKQAFDVFD ENRDGFLDPI DLKRVLTVLG LEQGSNLENC RRMIRSFDGN KDGRIDFYGF VKFMENNFC

Best Arabidopsis Sequence Match ( AT5G39670.1 )
(BLAST)

001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC

Arabidopsis Description

CML46Probable calcium-binding protein CML45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.