CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
extracellular 2
mitochondrion 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39670.1	CDX73678	AT3G51920.1	17360592
AT5G39670.1	CDX95314	AT3G51920.1	17360592
AT5G39670.1	CDY23174	AT3G51920.1	17360592
AT5G39670.1	CDY06478	AT4G14640.1	17360592
AT5G39670.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30262	Canola	cytosol	50.28	83.18
CDX74438	Canola	cytosol	50.28	83.18
Bra030349.1-P	Field mustard	endoplasmic reticulum, plastid	83.62	80.0
CDY15945	Canola	plastid	86.44	78.06
CDY20005	Canola	cytosol	41.24	69.52
CDY37011	Canola	plastid	70.06	64.25
CDX67435	Canola	plastid	68.93	62.24
AT5G39670.1	Thale cress	plastid	70.62	61.27
CDX74439	Canola	endoplasmic reticulum, extracellular, plastid, vacuole	67.23	59.8
CDX85236	Canola	endoplasmic reticulum, extracellular	52.54	49.47
CDY66024	Canola	endoplasmic reticulum, extracellular	51.41	49.46
CDY44416	Canola	cytosol, endoplasmic reticulum, mitochondrion, plastid	47.46	44.92
VIT_14s0108g01000.t01	Wine grape	cytosol	38.98	44.23
CDY09997	Canola	cytosol	17.51	43.06
CDY06192	Canola	cytosol	17.51	43.06
CDY28045	Canola	cytosol	18.64	39.29
CDY35936	Canola	cytosol	18.64	39.29
KRH40081	Soybean	cytosol	41.24	35.27
KRH01190	Soybean	cytosol, nucleus, vacuole	40.68	34.78
CDY09996	Canola	cytosol	16.95	32.97
PGSC0003DMT400003364	Potato	endoplasmic reticulum, golgi	33.9	32.09
Solyc02g088090.1.1	Tomato	extracellular, golgi	32.2	31.49
Solyc02g067220.2.1	Tomato	extracellular	24.86	31.43
KRH16684	Soybean	cytosol	32.77	30.05
PGSC0003DMT400064699	Potato	golgi	28.25	25.91

Protein Annotations

EnsemblPlants:CDX99659	EnsemblPlantsGene:GSBRNA2T00108175001	Gene3D:1.10.238.10	GO:A0A078EFU1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR45512
PANTHER:PTHR45512:SF1	PFAM:PF13499	PFscan:PS50222	ProteinID:CDX99659	ProteinID:CDX99659.1	ScanProsite:PS00018
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0004EE1ECC	MapMan:35.1	:	:

Description

BnaC04g34160D

Coordinates

chrLK031912:+:721178..721711

Molecular Weight (calculated)

20300.3 Da

IEP (calculated)

4.618

GRAVY (calculated)

-0.203

Length

177 amino acids

Sequence
(BLAST)

001: MPTLFCFPFV WSGGYLPQRV FRWVSFAQIL FSRCCPLLQH QQYVSEKMSK NLEVQSSIAH DDGLCIEDAV MVMQSLGLIT DTESLGLQKR YTAEELSNLF
101: EEKEPSLEEV KQAFDVFDEN RDGFLDPVDL QRVLTILGLK QGSNLDNCRR MISSLDGNKD GRINFHGFVK FMENNLC

Best Arabidopsis Sequence Match ( AT5G39670.1 )
(BLAST)

001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC

Arabidopsis Description

CML46Probable calcium-binding protein CML45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.